Dear Machine Learning Experts,
Do you know whether there is something useable in Java that would allow me to segment cells in below images? The intensity gradient in the transmission image could be avoided during acquisition, but if the algorithm was tolerant to that, even better
As a final output I would need nuclei and cell label masks.
Download raw data
I think even the classic 2D U-net publication contained an example of segmenting cells in transmission images, but I don’t know how to access this from Java.
Thank you for your help and time!