Can anybody help? I use the previous version of Cell profiler for Intel Mac’s (I note you uploaded a new version on Sept 22nd - this problem also applies to that release). Yesterday my Mac OS X Leopard system advised me to install Apple’s latest update - a new release of JAVA. Since then, when I open Cell profiler I can no longer type any text into boxes (e.g. change the default filename) yet the rest of the program seems to work fine).
The following appears on loadup in terminal:
Last login: Fri Sep 26 15:17:56 on ttys000
jr-mac7:~ richardreschen$ /Users/richardreschen/Desktop/MACI_1.0.5122/CellProfiler.command ; exit;
Fri Sep 26 15:18:32 jr-mac7.gurdon.cam.ac.uk CellProfiler : CGContextGetBaseCTM: invalid context
Fri Sep 26 15:18:32 jr-mac7.gurdon.cam.ac.uk CellProfiler : CGContextConvertSizeToDeviceSpace: invalid context
Fri Sep 26 15:18:32 jr-mac7.gurdon.cam.ac.uk CellProfiler : CGContextConvertSizeToUserSpace: invalid context
Warning: latest version of matlab app-defaults file not found.
Contact your system administrator to have this file installed
Multi-threaded Math Library is found.
Setting number of computational threads to 1.
Registered Multi-core features.
(Note it has always said Warning: latest version of matlab app-defaults file not found.) The new version of Cell Profiler doe snot work either, this one does not even get past terminal and the messages are: Last login: Fri Sep 26 16:18:48 on ttys003
jr-mac7:~ richardreschen$ /Users/richardreschen/Desktop/untitled\ folder/CellProfiler.command ; exit;
name /Users/richardreschen/Desktop/untitled folder/CellProfiler.command
/Users/richardreschen/Desktop/untitled folder/CellProfiler.command: line 11: /Users/richardreschen/Desktop/untitled: No such file or directory
I don’t know anything about JAVA or programming so the above messages don;t meant anything to me. However I use Cell Profiler to calculate mitotic indexes for a series of experiments I am doing, and need it desperately to work! Can anyone help?