This is the final question regarding establishing the Cell Painting platform at our department (original post at Cell Painting: Establishing the platform)
This is regarding the post-CellProfiler analysis of the profiles. It seems to us that the approach now is to use Cytominer to generate eg. per-well profiles from the per-cell profiles generated by CellProfiler.
Would this be the best approach or should we apply the scripts provided in the previous literature?
Along the same lines: I have difficulty finding a tutorial or the like for Cytominer. Is this available, or is some expertise needed?
With kinds regards
Esben B. Svenningsen, Ph.D. Student
Aarhus University, Denmark
Department of Chemistry
Bray, M. A. et al, Gigascience, 2017, 6, 1–5
Bray, M. A. et al, Nat. Protoc. 2016, 11, 1757–1774