I’m looking for a way to compute cell density map, based on already segmented cells (in 2D). My goal is to visually display the density map and quantify the location in the tissue with high concentration of the specific cells, eg based on distances from other objects.
@ThomasBoudier: How does 3D Density of 3D ImageJ Suite works? What exactly is it calculating? What do the different parameters control: Radius, NbNeighbors?
Should I use it with labeled image OR binary image of objects OR with an image of cell-centers (generated by ultimate points)?
Is there another Fiji plugin that calculates local density of objects?
@petebankhead: Is there a way to do it in QuPath?
@haesleinhuepf: any way to do this in CLIJ?