I would like to use TrakEM2 (or a similar plugin) to count and analyze plaques/tangles in the brain. For example, I would like to create a trace surrounding the plaques & tangles of the image below.
Is there a plugin available to segment these and also provide location dependent information (i.e., the distance between one plaque and the nearest, the location of the plaque relative to the left/right corner, plaque size, etc). Is there are automatic detection tool available as well? Thank you!