Cell Counter Help

Hello. I have a weird issue. After counting an image with imagej cell counter plugin I try to load the markers to the same image and sometimes the markers will load just fine but sometimes imagej tells me that “these markers do not belong to this image” and it will be the same image I put the markers on. Has anyone had this issue or knows how to fix it?

In addition, is there a way to select the color of the marker type? Sometimes I’ve had to add numerous marker types, up to type 40 just to get the color I want.

For solving the color feature you can use the MTB cell counter. It is based on the ImageJ Cell Counter plugin but offers more customization and has more advanced features such as a automated detector: http://mitobo.informatik.uni-halle.de/index.php/Applications/MTBCellCounter

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