Cell boundary coordinates

Is there any way to extract the boundary coordinates of the cells in cellprofiler? The coordinate of the object centroids are returned but what about the boundaries? Also what about the label of the pixels in terms of which object they belong to. For instance it would be nice that cellprofiler could output a matrix the same size as the original image such that each pixel is labeled with the object number it belongs to (possibly 0 for background or outlier).


You can use “ConvertObjectsToImage” module from the Objects Processing category for this. Save the generated image using SaveImages.