Can't open czi files

Usage & Issues
#1

I’m getting the following error message when I try to open czi files:

(Fiji Is Just) ImageJ 2.0.0-rc-69/1.52o; Java 1.8.0_172 [64-bit]; Windows 10 10.0; 193MB of 48948MB (<1%)
 
java.lang.ArrayIndexOutOfBoundsException: 1
	at loci.formats.in.ZeissCZIReader.translateInformation(ZeissCZIReader.java:2139)
	at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1996)
	at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:1125)
	at loci.formats.FormatReader.setId(FormatReader.java:1389)
	at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:499)
	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)
	at loci.plugins.in.Importer.showDialogs(Importer.java:140)
	at loci.plugins.in.Importer.run(Importer.java:76)
	at loci.plugins.LociImporter.run(LociImporter.java:78)
	at ij.IJ.runUserPlugIn(IJ.java:229)
	at ij.IJ.runPlugIn(IJ.java:193)
	at ij.IJ.runPlugIn(IJ.java:182)
	at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)
	at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)
	at ij.IJ.runUserPlugIn(IJ.java:229)
	at ij.IJ.runPlugIn(IJ.java:193)
	at ij.IJ.runPlugIn(IJ.java:182)
	at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:516)
	at ij.io.Opener.openImage(Opener.java:370)
	at ij.io.Opener.openImage(Opener.java:242)
	at ij.io.Opener.open(Opener.java:109)
	at ij.io.Opener.openAndAddToRecent(Opener.java:291)
	at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)
	at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
	at java.lang.Thread.run(Thread.java:748)

Is this a glitch in BioFormats? I welcome your suggestions. Thanks.

#2

Couple of quick questions, though I can’t tell what the error actually is right off.

  1. What type of CZI and can you provide an example? I have only run into problems with 8bit 2D brightfield tiles.
  2. Does this happen before or after the Importer window pops up?
    You should also probably add the BioFormats tag if you want BioFormats people to see it!
#3

Which version of BioFormat did you use and which version of ZEN Blue or Black did you use (how old is it)? I use the latest BioFormats to open CZI files more or less every day and it works fine for now, so a link to your CZI file would be helpful. Thaen I can give it a try and did depper if needed?

Sebi (from ZEISS)