Can not show the number of colonies in ExportToExcel

cellprofiler

#1

Hi,everyone,
I add ExportToExcel module behind MeasureObjectIntensity in my modified yeast counting pipeline.
I want to get the colonies number in Excel File. But it didn’t show yet.

The attaced are an example image and my pipeline.



yeastcounting1128PIPE.mat (1.6 KB)


#2

From the attached image, the total number can not be showed.


#3

Sorry, I forget giving you another infomation.
In 5811 version, the colonies number can not be showed.
But in 5122 version, it can show serial number.


#4

Hi,

You are correct; a column showing the object number has been removed from the later versions of CellProfiler.

However, if you want them back, a workaround is to Relate the to themselves (i.e., Colonies as both the parent and the child object). This will add an extra column at the end with the header Parent_Colonies which will have the colony number listed. Remember to add the Relate module after any measurement modules you may have.

Hope this helps!
-Mark