I’m able to open Imaris files in BDV with no problem, but I’m not sure what to do next. I would ideally like to convert a 2-channel Imaris file into two folders of TIFFs (one folder for each channel).
Hi @Superfrog and welcome to the forum!
I unfortunately don’t know how to use BDV to export files to tiff, but as an alternative to BDV, you could also use Bio-Formats, which comes preinstalled in Fiji as well:
Plugins > Bio-Formats > Bio-Formats Importer
It supports *.ims files as well as many other formats.
Afterward you can work on the image or just save it again as *.tif using :
Plugins > Bio-Formats > Bio-Formats Exporter. This will also give you an option to split the tif into several files (e.g. one per channel, time point or z-plane)
Hope this helps!