In the new version of cell profiler (v1.0.4628) there seems to be a problem when identifying primary objects. When I set “method to distinguish clumped objects or Method to draw dividing lines between clumped objects” to anything other than intensity the pipeline crashes. How can I fix this?
Sorry for the delay! Since your last post, we have released a new version of CellProfiler (v1.0.4684). If you are still having problems, please let me know.