CP and CPA are really invaluable tools. I realize now that CPA is actually utterly important, since while CP is great to produce data, what is the point if you cannot easily process that data? It is really too bad you did not get support to keep on improving CPA. Anyway…
I understand the “Brushing” originally described in your 2008 paper in Bioinformatics is not functional in CPA2 anymore (?!). I tried the “double lasso” strategy to select cells on a dot-plot in CPA2, which works fine, but VERY slowly. I have about 200000 cells, single channel, in a SQLite base (70Mo), on a W7 PC dual core 2.4GHz, 18Go RAM.
- Is it normal that it is so slow (>15s before anything shows up)?
- When I do lasso-select some cells in a dot-plot, nothing happens in the other dot-plots/histograms already opened, nor in newly created ones. What should I do to get the convenience of the brushing you originally described?
Thanks for your help, and these great programs!