Hello Fiji users!
I am using Fiji to visualize scans of long bones (humerus and femurs) for my PhD research. I want to measure different anatomical parameters. To do so, I first align my bones with Moment of Inertia, then I binarize my image (Process>Binary>Make Binary), and finally I use Slice Geometry. It works pretty well, the only problem is that the alignment with Moment of Inertia makes me lose a lot of quality and it’s not great to measure my parameters afterwards (see attached pictures).
Does anyone have an idea to correct this?
Thank you in advance for your help.