Blood vessel segmentation and network analysis

imagej

#1

Hello everyone,
I wanted to ask whether somebody can help me out with this error in Fiji:
I’m currently working on applying the Plugin TubeAnalyst.ijm for Blood vessel segmentation and network analysis from the source

When I applying it I can enter the settings of the vessel size and pixels inside the first window and press OK. Then the message appears: "unrecognized command: “3D Fast Filters”.

Therefore I was downloading the plugin 3D Fast Filters but the same error appears again.
Can anyone help me with this problem? I would be really thankful!!!


#2

Hi @katharina_hecker,

I do not know this macro, but you can install 3D Fast Filters from the 3D ImageJ Suite, from Fiji you need to activate both 3D ImageJ Suite and ImageScience.

Best,

Thomas


#3

Hi Thomas,
thanks alot! it is running now…
Best,
Katharina