I am trying to analyze some tissues for cell shape and neighbor numbers. For this I created a segmented image with Tissue Analyzer and start with the nice segmented image.
However, whenever I run neighbor analysis or shape descriptor maps, I found new cell borders introduced, especially in stretched cells.
I tried to run the tools without doing “run watershed first” but this is not working at all, it seems that the tool does not consider this image being already segmented.
Here is an example: One introduced cell border can be found at the lower right.
Voronoi_handCorrection.tif-1.tif (36.6 KB) handCorrection.tif (105.0 KB)
Is there any chance to circumvent the problem?
All the best