Bioformats2raw on Linux (CentOS)

How can I run bioformats2raw on Linux? Could someone provide a guide? I keep running into errors, that may be associated with libblosc. Could someone help provide some instructions on how to install the required dependencies? Thanks!

I’ve also attached the error that I have been running into.bioformat error.txt (41.0 KB)

Hi @willama33. Welcome to!

What Linux distribution are you using? If Ubuntu, for example, you’d need to install blosc with:

apt-get install -y libblosc1

with sudo or as root.


The Linux distribution I’m using is CentOS!

Then you’ll likely want:

yum install epel-release
yum install blosc