I’m having trouble opening .nd2 files that have many z-stacks (~100) with 4 color channels. I’ve never had an issue like this with any of my other .nd2 files. When I try to open the file I get the bio-formats import options like normal, then after that it seems to think that the image has multiple series which it doesn’t. I thought I was getting around this by opening all the series and concatenating but for some files it gives me an image that has 30 z planes rather than 100.
I’ve tried reinstalling the newest version of Fiji.
I’ve tried changing all the bio-imports options.
I’ve tried disabling chunkmap in the plugins configuration.
Nothing has helped which is super frustrating. Any help would be greatly appreciated!!!