I am trying to write a jython script that goes through my files in a directory hierarchy and does 4 things: 1.Load the image. 2. Max intensity Z project the image. 3. Bin the Image. 4. Save as .tif
I am generally on a good way. I can os.walk through the directory tree without problem and I can load images through from ij.plugin import ZProjector. I found the ij module and I also found out that I can get at the ZProjector with
from ij.plugin import ZProjector
Now I need to do binning and I just cannot find the command. I am fine with what is under Image>>>Transform>>>Bin…
I just cannot find it. Actually I cannot find any documentation whatsoever on the ij python module (I’m just assuming it’s somewhere in there). I found several tutorials but zero documentation. Any help would be greatly appreciated.