BigWarp 7.0.0. release

Dear BigWarp friends and users,

A new major release of BigWarp is out today!

A big thank you to everyone who has helped and given feedback,
John

Full-fledged N5 / Zarr support

  • N5 / Zarr / HDF5/ Bdv-xml files can be opened directly from the plugin dialog
  • Transformed images can be saved directly to N5 / Zarr / HDF5
  • Displacement fields can be exported directly to N5 / Zarr / HDF5

Huge volumes in the cloud

Now easier thanks to n5 support!

  • Moving s3://janelia-cosem/jrc_cos7-11/jrc_cos7-11.n5
  • Moving dataset /em/fibsem-uint16
  • Target s3://janelia-cosem/jrc_cos7-11/jrc_cos7-11.n5
  • Target dataset /lm/mito_palm

Other new features

  • Help > Show source information displays metadata
  • Can specify landmarks file from initial plugin dialog.
  • Bigwarp remembers the last folderyou saved landmarks to
  • Landmarks can be automatically, periodically saved to a location of your choosing

Bug fixes

A bunch of them.

11 Likes

Any idea if anything was altered that could impact Registration of whole slide images at cellular resolution with Fiji and QuPath ?

Haven’t used it yet, and it doesn’t look like the listed changes would, just curious if @NicoKiaru was aware of the upcoming release.

2 Likes

I think the functionality that @NicoKiaru needs was mostly untouched, but if there are issues, I’m happy to help.

Thanks @Mike_Nelson for the poke.

3 Likes

@Mike_Nelson for the moment BigDataViewer-Playground is overidding the new BigWarp version, so the workflow will work. I’ll update it to be compatible with the new BigWarp asap.

6 Likes

The automatic landmark saving feature is great! Thanks for implementing that.

1 Like