BigVolumeViewer Tech Demo

Hello, the demo was working smoothly, and was very useful for visualisation outside Imaris.

However it’s not working anymore on a fresh install of FIJI in windows 64bits. I got this error:

Exception in thread "PainterThread" java.lang.RuntimeException: com.jogamp.opengl.GLException: Caught IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9 on thread AWT-EventQueue-0
	at com.jogamp.common.util.awt.AWTEDTExecutor.invoke(AWTEDTExecutor.java:58)
	at jogamp.opengl.awt.AWTThreadingPlugin.invokeOnOpenGLThread(AWTThreadingPlugin.java:103)
	at jogamp.opengl.ThreadingImpl.invokeOnOpenGLThread(ThreadingImpl.java:201)
	at com.jogamp.opengl.Threading.invokeOnOpenGLThread(Threading.java:202)
	at com.jogamp.opengl.Threading.invoke(Threading.java:221)
	at com.jogamp.opengl.awt.GLCanvas.display(GLCanvas.java:505)
	at tpietzsch.util.PainterThread.run(PainterThread.java:88)
Caused by: com.jogamp.opengl.GLException: Caught IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9 on thread AWT-EventQueue-0
	at com.jogamp.opengl.GLException.newGLException(GLException.java:76)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1327)
	at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
	at com.jogamp.opengl.awt.GLCanvas$12.run(GLCanvas.java:1438)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9
	at tpietzsch.example2.Example9.display(Example9.java:420)
	at tpietzsch.util.InputFrame$1.display(InputFrame.java:71)
	at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
	at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
	at com.jogamp.opengl.awt.GLCanvas$11.run(GLCanvas.java:1424)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
	... 16 more
Exception in thread "AWT-EventQueue-0" com.jogamp.opengl.GLException: Caught IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9 on thread AWT-EventQueue-0
	at com.jogamp.opengl.GLException.newGLException(GLException.java:76)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1327)
	at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
	at com.jogamp.opengl.awt.GLCanvas$12.run(GLCanvas.java:1438)
	at com.jogamp.opengl.Threading.invoke(Threading.java:223)
	at com.jogamp.opengl.awt.GLCanvas.display(GLCanvas.java:505)
	at com.jogamp.opengl.awt.GLCanvas.paint(GLCanvas.java:559)
	at sun.awt.RepaintArea.paintComponent(RepaintArea.java:264)
	at sun.awt.RepaintArea.paint(RepaintArea.java:240)
	at sun.awt.windows.WComponentPeer.handleEvent(WComponentPeer.java:358)
	at java.awt.Component.dispatchEventImpl(Component.java:4965)
	at java.awt.Component.dispatchEvent(Component.java:4711)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
	at java.awt.EventQueue$4.run(EventQueue.java:733)
	at java.awt.EventQueue$4.run(EventQueue.java:731)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9
	at tpietzsch.example2.Example9.display(Example9.java:420)
	at tpietzsch.util.InputFrame$1.display(InputFrame.java:71)
	at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
	at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
	at com.jogamp.opengl.awt.GLCanvas$11.run(GLCanvas.java:1424)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
	... 28 more
Exception in thread "PainterThread" java.lang.RuntimeException: com.jogamp.opengl.GLException: Caught IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9 on thread AWT-EventQueue-0
	at com.jogamp.common.util.awt.AWTEDTExecutor.invoke(AWTEDTExecutor.java:58)
	at jogamp.opengl.awt.AWTThreadingPlugin.invokeOnOpenGLThread(AWTThreadingPlugin.java:103)
	at jogamp.opengl.ThreadingImpl.invokeOnOpenGLThread(ThreadingImpl.java:201)
	at com.jogamp.opengl.Threading.invokeOnOpenGLThread(Threading.java:202)
	at com.jogamp.opengl.Threading.invoke(Threading.java:221)
	at com.jogamp.opengl.awt.GLCanvas.display(GLCanvas.java:505)
	at tpietzsch.util.PainterThread.run(PainterThread.java:88)
Caused by: com.jogamp.opengl.GLException: Caught IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9 on thread AWT-EventQueue-0
	at com.jogamp.opengl.GLException.newGLException(GLException.java:76)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1327)
	at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
	at com.jogamp.opengl.awt.GLCanvas$12.run(GLCanvas.java:1438)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9
	at tpietzsch.example2.Example9.display(Example9.java:420)
	at tpietzsch.util.InputFrame$1.display(InputFrame.java:71)
	at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
	at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
	at com.jogamp.opengl.awt.GLCanvas$11.run(GLCanvas.java:1424)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
	... 16 more
Exception in thread "AWT-EventQueue-0" com.jogamp.opengl.GLException: Caught IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9 on thread AWT-EventQueue-0
	at com.jogamp.opengl.GLException.newGLException(GLException.java:76)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1327)
	at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147)
	at com.jogamp.opengl.awt.GLCanvas$12.run(GLCanvas.java:1438)
	at com.jogamp.opengl.Threading.invoke(Threading.java:223)
	at com.jogamp.opengl.awt.GLCanvas.display(GLCanvas.java:505)
	at com.jogamp.opengl.awt.GLCanvas.paint(GLCanvas.java:559)
	at sun.awt.RepaintArea.paintComponent(RepaintArea.java:264)
	at sun.awt.RepaintArea.paint(RepaintArea.java:240)
	at sun.awt.windows.WComponentPeer.handleEvent(WComponentPeer.java:358)
	at java.awt.Component.dispatchEventImpl(Component.java:4965)
	at java.awt.Component.dispatchEvent(Component.java:4711)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84)
	at java.awt.EventQueue$4.run(EventQueue.java:733)
	at java.awt.EventQueue$4.run(EventQueue.java:731)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:730)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalAccessError: tried to access method net.imglib2.util.StopWatch.<init>()V from class tpietzsch.example2.Example9
	at tpietzsch.example2.Example9.display(Example9.java:420)
	at tpietzsch.util.InputFrame$1.display(InputFrame.java:71)
	at jogamp.opengl.GLDrawableHelper.displayImpl(GLDrawableHelper.java:692)
	at jogamp.opengl.GLDrawableHelper.display(GLDrawableHelper.java:674)
	at com.jogamp.opengl.awt.GLCanvas$11.run(GLCanvas.java:1424)
	at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1293)
	... 28 more

Any idea for solving this ? FYI BigDataviewer is working ok on the same FIJI.

Some system info:

ImageJ 2.0.0-rc-69/1.52i; Java 1.8.0_172 [amd64]

-- Application: ImageJ --
Title = ImageJ
Version = 2.0.0-rc-69/1.52i
groupId = net.imagej
artifactId = imagej
Automatic-Module-Name = net.imagej
Build-Jdk = 1.8.0_151
Built-By = travis
Class-Path = imagej-common-0.28.0.jar imglib2-5.6.3.jar imglib2-roi-0.7.0.jar trove4j-3.0.3.jar scijava-table-0.2.0.jar udunits-4.3.18.jar imagej-notebook-0.3.0.jar imagej-ops-0.43.1.jar imagej-mesh-0.7.1.jar imglib2-algorithm-0.11.1.jar imglib2-algorithm-fft-0.2.0.jar mines-jtk-20151125.jar imglib2-realtransform-2.1.0.jar jitk-tps-3.0.0.jar ejml-0.24.jar log4j-1.2.17.jar parsington-1.0.4.jar scijava-search-0.5.0.jar prettytime-4.0.1.Final.jar scripting-javascript-0.4.4.jar commons-math3-3.6.1.jar joml-1.9.12.jar ojalgo-45.1.1.jar jama-1.0.3.jar imagej-updater-0.9.3.jar scifio-0.37.3.jar scifio-jai-imageio-1.1.1.jar imglib2-cache-1.0.0-beta-11.jar caffeine-2.4.0.jar scijava-common-2.76.1.jar eventbus-1.4.jar imagej-legacy-0.34.0.jar ij1-patcher-0.12.9.jar ij-1.52i.jar imglib2-ij-2.0.0-beta-44.jar scijava-ui-awt-0.1.6.jar scijava-ui-swing-0.12.0.jar swing-checkbox-tree-1.0.2.jar jdatepicker-1.3.2.jar javassist-3.24.0-GA.jar imagej-plugins-batch-0.1.1.jar batch-processor-0.3.0.jar commons-io-2.6.jar imagej-deprecated-0.1.2.jar imagej-plugins-commands-0.8.1.jar object-inspector-0.1.jar base64-2.3.8.jar imagej-plugins-tools-0.3.1.jar imagej-plugins-uploader-ssh-0.3.2.jar jsch-0.1.55.jar imagej-plugins-uploader-webdav-0.2.2.jar imagej-scripting-0.8.2.jar scripting-beanshell-0.3.3.jar bsh-2.0b6.jar scripting-clojure-0.1.6.jar clojure-1.8.0.jar scripting-groovy-0.2.7.jar groovy-2.4.8.jar ivy-2.4.0.jar gpars-1.2.1.jar multiverse-core-0.7.0.jar jsr166y-1.7.0.jar scripting-java-0.4.1.jar minimaven-2.2.1.jar scripting-jruby-0.3.0.jar jruby-core-9.1.17.0.jar jnr-netdb-1.1.6.jar jnr-enxio-0.16.jar jnr-x86asm-1.0.2.jar jnr-unixsocket-0.17.jar jnr-posix-3.0.44.jar jnr-constants-0.9.9.jar jffi-1.2.16.jar jffi-1.2.16-native.jar joni-2.1.15.jar bytelist-1.0.15.jar jcodings-1.0.27.jar dirgra-0.3.jar invokebinder-1.10.jar options-1.4.jar unsafe-fences-1.0.jar jzlib-1.1.3.jar nailgun-server-0.9.1.jar joda-time-2.10.1.jar modulator-1.0.jar jruby-stdlib-9.1.17.0.jar scripting-jython-0.4.2.jar jython-shaded-2.7.1.jar scripting-renjin-0.2.2.jar renjin-script-engine-0.8.1906.jar renjin-core-0.8.1906.jar commons-math-2.2.jar gcc-runtime-0.8.1906.jar netlib-java-0.9.3-renjin-patched-2.jar lapack-0.8.jar f2jutil-0.8.jar xerbla-0.8.jar blas-0.8.jar commons-vfs2-2.0.jar commons-logging-1.2.jar maven-scm-api-1.4.jar plexus-utils-1.5.6.jar maven-scm-provider-svnexe-1.4.jar maven-scm-provider-svn-commons-1.4.jar regexp-1.3.jar commons-compress-1.4.1.jar xz-1.0.jar jtransforms-2.4.jar jung-api-2.0.1.jar collections-generic-4.01.jar jung-graph-impl-2.0.1.jar asm-5.0.4.jar asm-util-5.0.4.jar asm-tree-5.0.4.jar asm-commons-5.0.4.jar guava-21.0.jar codemodel-2.6.jar stats-0.8.1906.jar renjin-appl-0.8.1906.jar renjin-gnur-runtime-0.8.1906.jar methods-0.8.1906.jar datasets-0.8.1906.jar utils-0.8.1906.jar grDevices-0.8.1906.jar graphics-0.8.1906.jar scripting-scala-0.2.1.jar scala-compiler-2.12.1.jar scala-library-2.12.1.jar scala-reflect-2.12.1.jar scala-xml_2.12-1.0.6.jar imagej-ui-swing-0.22.0.jar miglayout-3.7.4-swing.jar jfreechart-1.5.0.jar jhotdraw-7.6.0.jar imagej-ui-awt-0.3.1.jar scijava-plugins-commands-0.2.3.jar scijava-plugins-platforms-0.3.1.jar scijava-plugins-text-markdown-0.1.3.jar markdownj-0.3.0-1.0.2b4.jar scijava-plugins-text-plain-0.1.3.jar commons-lang3-3.8.1.jar script-editor-0.4.0.jar rsyntaxtextarea-2.6.1.jar languagesupport-2.6.0.jar autocomplete-2.6.1.jar rhino-1.7.6.jar
Created-By = Apache Maven 3.5.2
Implementation-Build = 269a0ad53fd72b66a4099a25a92b02d15c3ccd32
Implementation-Date = 2018-12-04T11:30:09+0000
Implementation-Title = ImageJ
Implementation-URL = http://imagej.net/
Implementation-Vendor = ImageJ
Implementation-Vendor-Id = net.imagej
Implementation-Version = 2.0.0-rc-69
Main-Class = net.imagej.Main
Manifest-Version = 1.0
Package = net.imagej
Premain-Class = 
Specification-Title = ImageJ
Specification-Vendor = ImageJ
Specification-Version = 2.0

-- Application: Fiji --
Title = Fiji
Version = 2.0.0-pre-8
groupId = sc.fiji
artifactId = fiji
Automatic-Module-Name = sc.fiji
Build-Jdk = 1.8.0_151
Built-By = travis
Class-Path = imagej-2.0.0-rc-69.jar imagej-common-0.28.0.jar udunits-4.3.18.jar imagej-notebook-0.3.0.jar imagej-ops-0.43.1.jar imagej-mesh-0.7.1.jar scripting-javascript-0.4.4.jar ojalgo-45.1.1.jar imagej-updater-0.9.3.jar scifio-0.37.3.jar scifio-jai-imageio-1.1.1.jar imagej-plugins-batch-0.1.1.jar batch-processor-0.3.0.jar imagej-deprecated-0.1.2.jar imagej-plugins-commands-0.8.1.jar object-inspector-0.1.jar base64-2.3.8.jar imagej-plugins-tools-0.3.1.jar imagej-plugins-uploader-ssh-0.3.2.jar imagej-plugins-uploader-webdav-0.2.2.jar imagej-scripting-0.8.2.jar scripting-beanshell-0.3.3.jar bsh-2.0b6.jar scripting-clojure-0.1.6.jar clojure-1.8.0.jar scripting-groovy-0.2.7.jar groovy-2.4.8.jar ivy-2.4.0.jar gpars-1.2.1.jar multiverse-core-0.7.0.jar jsr166y-1.7.0.jar scripting-java-0.4.1.jar minimaven-2.2.1.jar scripting-jruby-0.3.0.jar jruby-core-9.1.17.0.jar jnr-netdb-1.1.6.jar jnr-enxio-0.16.jar jnr-x86asm-1.0.2.jar jnr-unixsocket-0.17.jar jnr-posix-3.0.44.jar jnr-constants-0.9.9.jar jffi-1.2.16.jar jffi-1.2.16-native.jar joni-2.1.15.jar bytelist-1.0.15.jar jcodings-1.0.27.jar dirgra-0.3.jar invokebinder-1.10.jar options-1.4.jar unsafe-fences-1.0.jar nailgun-server-0.9.1.jar modulator-1.0.jar jruby-stdlib-9.1.17.0.jar scripting-jython-0.4.2.jar jython-shaded-2.7.1.jar scripting-renjin-0.2.2.jar renjin-script-engine-0.8.1906.jar renjin-core-0.8.1906.jar commons-math-2.2.jar gcc-runtime-0.8.1906.jar netlib-java-0.9.3-renjin-patched-2.jar lapack-0.8.jar f2jutil-0.8.jar xerbla-0.8.jar blas-0.8.jar commons-vfs2-2.0.jar maven-scm-api-1.4.jar plexus-utils-1.5.6.jar maven-scm-provider-svnexe-1.4.jar maven-scm-provider-svn-commons-1.4.jar regexp-1.3.jar commons-compress-1.4.1.jar xz-1.0.jar jtransforms-2.4.jar jung-api-2.0.1.jar collections-generic-4.01.jar jung-graph-impl-2.0.1.jar asm-5.0.4.jar asm-util-5.0.4.jar asm-tree-5.0.4.jar asm-commons-5.0.4.jar codemodel-2.6.jar stats-0.8.1906.jar renjin-appl-0.8.1906.jar renjin-gnur-runtime-0.8.1906.jar methods-0.8.1906.jar datasets-0.8.1906.jar utils-0.8.1906.jar grDevices-0.8.1906.jar graphics-0.8.1906.jar scripting-scala-0.2.1.jar scala-compiler-2.12.1.jar scala-library-2.12.1.jar scala-reflect-2.12.1.jar scala-xml_2.12-1.0.6.jar imagej-ui-swing-0.22.0.jar jhotdraw-7.6.0.jar imagej-ui-awt-0.3.1.jar scijava-plugins-commands-0.2.3.jar scijava-plugins-platforms-0.3.1.jar scijava-plugins-text-markdown-0.1.3.jar markdownj-0.3.0-1.0.2b4.jar scijava-plugins-text-plain-0.1.3.jar commons-lang3-3.8.1.jar script-editor-0.4.0.jar rsyntaxtextarea-2.6.1.jar languagesupport-2.6.0.jar autocomplete-2.6.1.jar rhino-1.7.6.jar ij-1.52i.jar ij1-patcher-0.12.9.jar imagej-legacy-0.34.0.jar imglib2-5.6.3.jar imglib2-ij-2.0.0-beta-44.jar imglib2-roi-0.7.0.jar trove4j-3.0.3.jar scijava-search-0.5.0.jar prettytime-4.0.1.Final.jar scijava-table-0.2.0.jar scijava-ui-awt-0.1.6.jar scijava-ui-swing-0.12.0.jar swing-checkbox-tree-1.0.2.jar jdatepicker-1.3.2.jar javassist-3.24.0-GA.jar scijava-common-2.76.1.jar parsington-1.0.4.jar eventbus-1.4.jar op-finder-0.1.3.jar swingx-1.6.1.jar filters-2.0.235.jar swing-worker-1.1.jar miglayout-3.7.4-swing.jar ahocorasick-0.2.4.jar jsoup-1.7.2.jar 3D_Blob_Segmentation-3.0.1.jar vecmath-1.6.0-scijava-2.jar 3D_Objects_Counter-2.0.1.jar 3D_Viewer-4.0.2.jar jama-1.0.3.jar j3dcore-1.6.0-scijava-2.jar j3dutils-1.6.0-scijava-2.jar AnalyzeSkeleton_-3.3.0.jar joml-1.9.12.jar Anisotropic_Diffusion_2D-2.0.1.jar Archipelago_Plugins-0.5.4.jar weka-dev-3.9.3.jar bounce-0.18.jar mtj-1.0.4.jar Arrow_-2.0.2.jar Auto_Local_Threshold-1.10.0.jar Auto_Threshold-1.17.1.jar BalloonSegmentation_-3.0.1.jar Bug_Submitter-2.1.1.jar CPU_Meter-2.0.1.jar jna-4.5.2.jar Calculator_Plus-2.0.1.jar Cell_Counter-2.2.2.jar Colocalisation_Analysis-3.0.5.jar imglib2-algorithm-0.11.1.jar itextpdf-5.5.13.jar Color_Histogram-2.0.7.jar Color_Inspector_3D-2.3.2.jar Colour_Deconvolution-3.0.2.jar CorrectBleach_-2.0.2.jar Correct_3D_Drift-1.0.3.jar Descriptor_based_registration-2.1.2.jar mpicbg-1.2.0.jar Dichromacy_-2.1.1.jar Directionality_-2.3.0.jar jfreechart-1.5.0.jar FS_Align_TrakEM2-2.0.3.jar Feature_Detection-2.0.2.jar Fiji_Archipelago-2.0.1.jar jsch-0.1.55.jar Fiji_Developer-2.0.7.jar Fiji_Package_Maker-2.1.1.jar Fiji_Plugins-3.1.1.jar FlowJ_-1.29.3.jar Graph_Cut-1.0.2.jar Gray_Morphology-2.3.4.jar Helmholtz_Analysis-2.0.2.jar IJ_Robot-2.0.1.jar IO_-3.0.4.jar batik-bridge-1.10.jar batik-anim-1.10.jar batik-awt-util-1.10.jar batik-css-1.10.jar batik-parser-1.10.jar batik-script-1.10.jar batik-svg-dom-1.10.jar batik-util-1.10.jar batik-constants-1.10.jar batik-i18n-1.10.jar batik-xml-1.10.jar xmlgraphics-commons-2.3.jar commons-logging-1.2.jar xml-apis-ext-1.3.04.jar batik-gvt-1.10.jar image4j-0.7.jar jpedalSTD-2.80b11.jar jzlib-1.1.3.jar Image_5D-2.0.2.jar Image_Expression_Parser-3.0.1.jar imglib2-algorithm-gpl-0.2.3.jar jep-2.4.2.jar Interactive_3D_Surface_Plot-3.0.0.jar IsoData_Classifier-2.0.1.jar Kuwahara_Filter-2.0.1.jar KymographBuilder-2.1.1.jar LSM_Reader-4.1.2.jar LSM_Toolbox-4.1.2.jar Lasso_and_Blow_Tool-2.0.2.jar Linear_Kuwahara-2.0.1.jar LocalThickness_-4.0.2.jar MTrack2_-2.0.1.jar M_I_P-2.0.1.jar Manual_Tracking-2.1.1.jar Multi_Kymograph-3.0.1.jar OMEVisual-1.1.2.jar PIV_analyser-1.1.2.jar QuickPALM_-1.1.2.jar RATS_-2.0.2.jar Reconstruct_Reader-2.0.4.jar SPIM_Opener-2.0.2.jar SPIM_Registration-5.0.19.jar imglib2-realtransform-2.1.0.jar formats-api-5.9.2.jar ome-codecs-0.2.2.jar ome-jai-0.1.0.jar formats-bsd-5.9.2.jar specification-5.6.3.jar turbojpeg-5.9.2.jar native-lib-loader-2.3.2.jar kryo-2.24.0.jar minlog-1.2.jar objenesis-2.1.jar perf4j-0.9.13.jar guava-21.0.jar metadata-extractor-2.6.2.jar xmpcore-5.1.2.jar xercesImpl-2.8.1.jar formats-gpl-5.9.2.jar ome-mdbtools-5.3.2.jar metakit-5.3.2.jar ome-poi-5.3.3.jar jxrlib-all-0.2.1.jar netcdf-4.3.22.jar JWlz-1.4.0.jar json-20090211.jar ome-xml-5.6.4.jar ome-common-5.3.7.jar jdom2-2.0.6.jar Samples_-2.0.2.jar Series_Labeler-2.0.1.jar Simple_Neurite_Tracer-3.1.6.jar commons-math3-3.6.1.jar batik-dom-1.10.jar batik-ext-1.10.jar batik-svggen-1.10.jar Siox_Segmentation-1.0.5.jar Skeletonize3D_-2.1.1.jar SplineDeformationGenerator_-2.0.2.jar Stack_Manipulation-2.1.1.jar Statistical_Region_Merging-2.0.1.jar Stitching_-3.1.6.jar mines-jtk-20151125.jar Sync_Win-1.7-fiji4.jar Thread_Killer-2.0.1.jar Time_Lapse-2.1.0.jar Time_Stamper-2.1.0.jar ToAST_-25.0.2.jar TopoJ_-2.0.1.jar TrackMate_-3.8.0.jar jgrapht-0.8.3.jar jgraphx-3.4.1.3.jar Trainable_Segmentation-3.2.29.jar TrakEM2_Archipelago-2.0.3.jar VIB-lib-2.2.0.jar VIB_-3.0.2.jar Vaa3d_Reader-2.0.2.jar Vaa3d_Writer-1.0.2.jar Video_Editing-2.0.1.jar View5D_-1.3.2.jar Volume_Calculator-2.0.2.jar Volume_Viewer-2.01.2.jar bUnwarpJ_-2.6.9.jar blockmatching_-2.1.3.jar fiji-lib-2.1.2.jar H5J_Loader_Plugin-1.0.7.jar jhdf5-14.12.6.jar commons-lang-2.6.jar commons-io-2.6.jar ffmpeg-2.6.1-0.11.jar javacpp-0.11.jar ffmpeg-2.6.1-0.11-linux-x86_64.jar HDF5_Vibez-1.0.2.jar legacy-imglib1-1.1.9.jar level_sets-1.0.2.jar pal-optimization-2.0.1.jar panorama_-3.0.2.jar register_virtual_stack_slices-3.0.5.jar registration_3d-2.0.1.jar weave_jy2java-2.1.1.jar z_spacing-1.1.1.jar imglib2-algorithm-fft-0.2.0.jar Sholl_Analysis-3.7.4.jar jitk-tps-3.0.0.jar ejml-0.24.jar log4j-1.2.17.jar mpicbg_-1.2.0.jar bio-formats_plugins-5.9.2.jar jgoodies-forms-1.7.2.jar jgoodies-common-1.7.0.jar slf4j-api-1.7.25.jar logback-core-1.2.3.jar bigwarp_fiji-3.1.2.jar imglib2-ui-2.0.0.jar opencsv-3.9.jar commons-beanutils-1.9.3.jar commons-collections-3.2.2.jar jcommander-1.48.jar trakem2_tps-1.1.4.jar commons-codec-1.11.jar bigdataviewer-core-5.1.0.jar imglib2-cache-1.0.0-beta-11.jar caffeine-2.4.0.jar gson-2.8.5.jar ui-behaviour-1.7.4.jar snakeyaml-1.23.jar bigdataviewer-vistools-1.0.0-beta-11.jar bigdataviewer_fiji-5.0.0.jar spim_data-2.2.2.jar T2-NIT-1.1.2.jar T2-TreelineGraph-1.1.2.jar TrakEM2_-1.3.2.jar postgresql-9.1-901-1.jdbc4.jar jai-codec-1.1.3.jar jai-core-1.1.3.jar VectorString-2.0.2.jar trakem2-transform-1.0.1.jar scifio-bf-compat-3.0.0.jar scifio-hdf5-0.1.3.jar scifio-lifesci-0.8.0.jar scifio-ome-xml-0.15.0.jar scifio-cli-0.5.0.jar args4j-2.0.25.jar scijava-config-2.0.2.jar gluegen-rt-main-2.3.2.jar gluegen-rt-2.3.2.jar gluegen-rt-2.3.2-natives-android-aarch64.jar gluegen-rt-2.3.2-natives-android-armv6.jar gluegen-rt-2.3.2-natives-linux-amd64.jar gluegen-rt-2.3.2-natives-linux-armv6.jar gluegen-rt-2.3.2-natives-linux-armv6hf.jar gluegen-rt-2.3.2-natives-linux-i586.jar gluegen-rt-2.3.2-natives-macosx-universal.jar gluegen-rt-2.3.2-natives-solaris-amd64.jar gluegen-rt-2.3.2-natives-solaris-i586.jar gluegen-rt-2.3.2-natives-windows-amd64.jar gluegen-rt-2.3.2-natives-windows-i586.jar joal-main-2.3.2.jar joal-2.3.2.jar joal-2.3.2-natives-android-aarch64.jar joal-2.3.2-natives-android-armv6.jar joal-2.3.2-natives-linux-amd64.jar joal-2.3.2-natives-linux-armv6.jar joal-2.3.2-natives-linux-armv6hf.jar joal-2.3.2-natives-linux-i586.jar joal-2.3.2-natives-macosx-universal.jar joal-2.3.2-natives-solaris-amd64.jar joal-2.3.2-natives-solaris-i586.jar joal-2.3.2-natives-windows-amd64.jar joal-2.3.2-natives-windows-i586.jar jocl-main-2.3.2.jar jocl-2.3.2.jar jocl-2.3.2-natives-android-aarch64.jar jocl-2.3.2-natives-android-armv6.jar jocl-2.3.2-natives-linux-amd64.jar jocl-2.3.2-natives-linux-armv6.jar jocl-2.3.2-natives-linux-armv6hf.jar jocl-2.3.2-natives-linux-i586.jar jocl-2.3.2-natives-macosx-universal.jar jocl-2.3.2-natives-solaris-amd64.jar jocl-2.3.2-natives-solaris-i586.jar jocl-2.3.2-natives-windows-amd64.jar jocl-2.3.2-natives-windows-i586.jar jogl-all-main-2.3.2.jar jogl-all-2.3.2.jar jogl-all-2.3.2-natives-android-aarch64.jar jogl-all-2.3.2-natives-android-armv6.jar jogl-all-2.3.2-natives-linux-amd64.jar jogl-all-2.3.2-natives-linux-armv6.jar jogl-all-2.3.2-natives-linux-armv6hf.jar jogl-all-2.3.2-natives-linux-i586.jar jogl-all-2.3.2-natives-macosx-universal.jar jogl-all-2.3.2-natives-solaris-amd64.jar jogl-all-2.3.2-natives-solaris-i586.jar jogl-all-2.3.2-natives-windows-amd64.jar jogl-all-2.3.2-natives-windows-i586.jar logback-classic-1.2.3.jar joda-time-2.10.1.jar

Not involved in BigVolumeViewer, but here is my guess:

  • Quick & dirty solution: copy an older imglib2 jar with the old interface of the StopWatch into your Fiji jar directory.
  • Good solution: Make a PR to BigVolumeViewer and update the dependencies so they are up-to-date with what is in Fiji.
5 Likes

This should be fixed now

2 Likes

Hi; working nicely. Are the Shift-x, Shift-y, Shift-z shortcuts to view x, y, and z planes implemented here? Don’t seem to be working on a Mac. F and S (for Fuse, etc.) work OK.

Not yet, but should be very easy to add. I’ll do it next time I work on the code.

Great, thanks. I’m using it for figure preparation at the moment :smile:

1 Like

Hi @tpietzsch,
this is just to let you know that its working fantastic out of the box for me and is absolutely awesome! Thanks for this :slight_smile:

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I also find this tool very helpful! Thanks :smile:

1 Like