I wanted to ask the community what the best method is for accessing ImageJ plugins in python. I know that you can write scripts/macros through jython, but it would be better for our workflow to use a different package. Does anyone have experience using ImageJ plugins with the PyImageJ package? Specifically, I am trying to utilize the MIST stitching plugin (https://github.com/usnistgov/MIST) and I am wondering what may be the most accessible way to access such a plugin in custom python scripts. Thanks for your help!
Edit: I have found that using the run_plugin feature with PyImageJ works great! If there are any other cool solutions that people have found I would love to hear them.