BatchProcessing on a non-LSF Queing System



I am trying to do batch processing for a CellProfiler pipeline. I looked at the example code for an LSF queing system, but we have a Sungrid queing system. Could you explain exactly what the code does so that I can modify it to work for our queing system?

Thank you very much!


My understanding of the scripts is that they write out the series of qsub commands for LSF. Like you I’m in the process of getting this to run with SGE. As you can see from my other posts I still haven’t got to the stage where I’d want to launch jobs. I’d be happy to share ideas with you though, drop me a PM if you’re interested.