I have trained a model in ilastik (1.3.2. on Ubuntu 16.04) on one of my (microCT scanned lung) datasets.
Now I’d like to apply the trained model to the 11 other datasets.
The dataset I trained ilastik on is generated from a stack of images (approximately 700 images with 700x700 px), which I loaded as a stack.
I cannot seem to find a way to apply ‘Batch processing’ to the other 11 stacks.
The only option I have is ‘Select Raw Data Files’, which seems to expect one file per sample and not a stack of files per sample.
Do I need to convert the other stacks to H5 files prior to loading them in ilastik?