I just discovered Fiji and I am using Image Calculator to process my images. It works great and now I would like to use the Batch mode and create a macro to analyze several images automatically, but I have no idea where to start. So, any help is more than welcome!
Here is my plan:
I have two folders with pictures:
Folder “S”: contains sample pictures
Folder “R”: contains reference Pictures
Now I would like to compare these pictures with each other in the following way:
Picture “Sample1” from folder “S” should be compared with every reference pictures in folder “R”.
Something like: imageCalculator(“Average create”, “Sample1.Tiff”,“Reference1.Tiff”);
The file name should be changed in “Sample1+Reference1” and saved in a new folder “Output”
This steps should be repeated till “Sample1” was compared with all references in folder “R”.
After that, “Sample2” in folder “S” should be processed and so on …
I hope it is not too confusing.
If anyone has an idea where to start or links to tutorials, I would be very happy!