Hope this is helpful to someone else. I hobbled this together with a basic understanding and the docs online. Finally managed to get it working! I’m sure there are many changes to be made. My goal was to get this running locally.
Basic Install Notes for Omero Server and Web on CentOS 7
Install everything as root.
Run as root.
REQUIREMENTS
- Getting Started | Open Microscopy Environment (OME)
- System requirements — OMERO 5.6.3 documentation
- Version requirements — OMERO documentation
Install CENTOS - “Minimal Install”
NOTE !!: Set up all users and network in config screens
UPDATE CENTOS - How To Update CentOS 7.0/7.1/7.2/7.3/7.4/7.5 to CentOS 7.6
# yum check-update
# yum update
# reboot
INSTALL REPOSITORIES AND SOME PREREQUISITES and HELPFUL TOOLS
# yum install -y wget make epel-release nano mlocate
# updatedb
INSTALL PYTHON 3.7 - Install Python 3.7.0 on Centos 7 · GitHub
# yum install gcc openssl-devel bzip2-devel libffi-devel -y
# cd /usr/src
# wget https://www.python.org/ftp/python/3.7.0/Python-3.7.0.tgz
# tar xzf Python-3.7.0.tgz
# cd Python-3.7.0
# ./configure --enable-optimizations
# make altinstall
# rm /usr/src/Python-3.7.0.tgz
# python3.7 -V
# pip3.7 -V
# pip3.7 install --upgrade pip
INSTALL DOCKER - Install Docker Engine on CentOS | Docker Documentation
# yum install -y yum-utils
# yum-config-manager \
--add-repo \
https://download.docker.com/linux/centos/docker-ce.repo
# yum install -y docker-ce docker-ce-cli containerd.io
# systemctl enable docker
# systemctl start docker
INSTALL DOCKER - COMPOSE - GitHub - ome/docker-example-omero at 94a6a77d4efa98304ab8bcfb3e333343bd795603
# pip3.7 install docker-compose
ADD DOCKER COMPOSE FILE
Add file “docker-compose.yml” added to “homes” directory. Copy and paste below.
version: "3"
services:
database:
image: "postgres:11"
environment:
POSTGRES_USER: omero
POSTGRES_DB: omero
POSTGRES_PASSWORD: omero
networks:
- omero
volumes:
- "database:/var/lib/postgresql/data"
omeroserver:
image: "openmicroscopy/omero-server:5.6"
environment:
CONFIG_omero_db_host: database
CONFIG_omero_db_user: omero
CONFIG_omero_db_pass: omero
CONFIG_omero_db_name: omero
ROOTPASS: omero
networks:
- omero
ports:
- "4063:4063"
- "4064:4064"
volumes:
- "omero:/OMERO"
omeroweb:
image: "openmicroscopy/omero-web-standalone:5.6"
environment:
OMEROHOST: omeroserver
networks:
- omero
ports:
- "4080:4080"
networks:
omero:
volumes:
database:
omero:
RUN - GitHub - ome/docker-example-omero at 94a6a77d4efa98304ab8bcfb3e333343bd795603
docker-compose up -d
docker-compose logs -f
OMERO.server is listening on the standard OMERO ports 4063 and 4064.
OMERO.web is listening on port 4080 (http://localhost:4080/).
Log in as user root password omero.
The initial password can be changed in docker-compose.yml.