Bacteria detection

Dear Sir/Madam,

Thank you for your great software. I want to use it to count a bacterial population and measure the orientation of each cell. I succeeded to count the cells and got the data from the software but I don’t know how to find their orientation. could you please advise on how to find it.



The MeasureObjectSizeAndShape module should be able to give you that information. In general, if you don’t want to wait for a forum answer, you may often be able to find out which module measures a certain thing by searching the measurement you want in the help text of CellProfiler - we try to enumerate them there specifically for that region.
Congrats on a successful pipeline, and good luck!