A few months back you helped me out with a pipeline to quantify blue versus red areas in order to measure fibrosis in heart samples (attached image and pipeline). I’ve noticed that one problem with the current pipeline is that it counts the white parts of the image as fibrosis (blue) since white contains blue. I was wondering if there is a way to filter out the white from the quantification measurement (perhaps by subtracting those sections where blue, white, and green are all equal)?
Thanks so much!
2009_02_20_FibrosisPIPE.mat (1.53 KB)