Automation of neurons astrocytes oligodendrocytes and glial cells in brain section

I would like to automate the analysis of a large batch of brain images labelled with neuronal astrocytic oligodendrocytic and glial cells.

I would like to use CNN to do that but I never used FIJI for that.

Someone can bring help to start ?

Thanks

David

Hi @David_Barriere,

You can try using U-net for image segmentation which uses CNN. It also has a plugin for Fiji/ImageJ.

Regards,
Lakshmi
www.wakoautomation.com