Automated anotations


Im trying to use qupath to annotate some prostate histology samples. I’ve attached a picture of what im trying to do. I need to annotate the stroma(green), Epithelium cells(red) and the fluid(blue).

Does anyone knows if this can be fully automated or partioaly outomated? If it cant be done on qupath, im open to sugegestions of different software that might be better suted.

Hi @Calum,

Have you checked out the Pixel classifier? It sounds like it’s exactly what you need for your task.
This link to the official QuPath documentation will show you how to use it.
Give it a try and if you’re stuck at any point of the process, don’t hesitate to post here :slight_smile: