After having identified objects from many histo slides, I’d like to output simply slide ( image file ) name and %area to a spreadsheet after using MeasureImageAreaOccupied. Have been stumbling around with this for a day or so. Any guidance would be appreciated
You should be able to simply add the ExportToSpreadsheet module at the end of your pipeline and it will output .csv files with your data that can be read by spreadsheet programs by default. You probably want to focus on the “…_Image.csv” file, which has data aggregated at the Per_image level.
This will give you a lot of output potentially, though. To output simply the few columns you want, check the box in ExportToSpreadsheet “Select the columns of measurements to export” and choose the measurements you like.
Hope that helps!
Thanks, got it running …