I have some multi-channel dataset (from an Array Tomography application) and I would like to align the “tiles” (2D images) from each layer (Z position, made from multiple overlapping tiles) into a 3D (single stack). I have managed to get the job done for a single spectral channel and would like to apply the computed transform to the other channels. Manually editing the .XML file didn’t work as additional files are generated by TrakEM when saving a project. Any suggestions here? Maybe one can create a template?
Help much appreciated!