Hi Apeer users,
I’m trying to segment an H&E dataset of muscle tissues.
For whatever reason, after training (2 images) and running the segmentation, it appears to only have a mask of the background; where the other results just seem like the normal image.
Am I missing something?
Raw (example 1-of-9):
20210301_MyScan_Slide1_1.tif (9.0 MB)
Result screen on Apeer:
What I see on the web viewer (nothing):
The only result image I can view with some segmentation visible (I assume it BG segmentation):
What is missing for me to get a similar image (segmented on ilastik)?
The goal I to segment single fibers, wherever the tissue is properly sectioned (circular fibers are good, elongated are bad). I don’t care to have bad segmentation as long as I can screen by size and circularity.
What stops you from proceeding?
apeer interface is not so intuitive o me.
What have you tried already?
Thanks to the helpers!