Announcing CellProfiler 3.1.9

Hello all! It’s been a crazy last few months for the CellProfiler team, as we’ve been hiring some new members to the team and working hard on the transition to Python 3, which will bump us into CellProfiler version 4. Keep your eyes peeled for exciting content (and much more forum help) in the future!

We did want to bring you one last release in the 3.X series, though, especially for OSX 10.14 users who have been left without a useable build. This release also has some minor bugfixes in RelateObjects and IdentifySecondaryObjects.

As usual, you will find this new release (and links to all our old releases) on our releases page.

Thanks very much to Allen Goodman, Matthew Bowden, Anne Carpenter, Jan Eglinger, and GitHub user “cloudsforest” for their contributions on this release.


I can not wait to try it but AVAST says there is a Trojan … ???
Should I continue to install it ???
Best regards


It’s certainly not a Trojan, though I do have to say disappointingly we weren’t able to code sign it; I don’t know if that’s what AVAST is reacting to? Can you let me know OS version, AVAST version, etc?

ETA: Screenshot (or even better, copied-and-pasted-text) of the error message would definitely also help.

I’m pretty sure it’s not a real Trojan but more likely an Avast mistake. :grinning:
Here are some screenshots.
My config:
i7 8700/64 GB Ram / Win 10
avast.tif (749.5 KB) Win.tif (304.6 KB) Win2.tif (129.5 KB)