I am comparing histomorphometry results from commercial and BoneJ software.
Except Anisotropy and SMI, all other values look similar.
Is there a manual how to properly prepare your stack for BoneJ analysis, since I am missing something definitely?
update: I try to evaluate cylindrical models, and somehow I think that my circular selection is not evaluated but the whole square instead. How can I make sure that only my ROI is analysed, not the whole window?