Hello! I looking for plugin as well as image analysis suggestions here. I have SEM cross-section images of foams typically honeycomb like image in ideal case. I would like to analyze the pore size and their distribution stats throughout the image. Thanks in advance!
With an image we can help you.
Sure, thanks! foam crossection.tif (1.2 MB)
Image difficult to treat.
We do not know how high we must delimit the pores.
You have to “play” with the filters.
A proposal :
//setTool("rectangle"); makeRectangle(0, 0, 1278, 892); run("Crop"); run("Duplicate...", "title=1"); run("Duplicate...", "title=2"); run("Gaussian Blur...", "sigma=4"); setAutoThreshold("Percentile"); //run("Threshold..."); setOption("BlackBackground", true); run("Convert to Mask"); run("Analyze Particles...", "display add"); selectWindow("1"); roiManager("Show All without labels");
Thank you very much for this! Just a follow up on this: the proposed codes you mentioned, is there a specific way to make image J take these codes. I’m more used to clicking the tabs and working. I’m sorry if my question sounds a bit stupid, I’m still new to this software.
I do not understand your question.
If you want to save the code then you have to go:
plugin -> new->macro
( copy and paste)