I’m generating a cellprofiler pipeline which I will use in a cluster for batch processing. Since this pipeline has to be made with the GUI version, We can just drag and drop the folder and add the necessary modules for creating the pipelines. But my In/out folder in the cluster will be different from the folder I will be on my computer. So, What change do I have to make to the default in/out folder?
In the module CreateBatchFiles, there is an option to choose the output folder path. I gave one of the cluster folder paths for that purpose.
For convenience purposes, I’m creating the above pipeline with only 3 images but I will batch process around 8000 images. Will it pose any compatibility issue?