3D render of neuron swc



I have some complicated 3D immunofluorescence data for neuron in an organ. I can open the tiff stack in FIJI, no problem. However, any attempt at using Simple Neurite Tracer crashes my laptop. The data is too complicated to model manually. I was successful in modeling in Neutube and making a swc file. When I tried to import the swc file into FIJI, I got a 2D image. Any suggestions for another approach or any tricks I might have missed along the way?


You can try http://imagej.net/SciView to get a 3D rendering, and let us know what else you need. We plan on updating Simple Neurite Tracer to interface with SciView as well.