Usage & Issues


Topic Replies Views Activity
Instructions for creating an Update Site
update-site

We have been getting a few Update Site requests lately and along with them, many questions regarding the steps to create one. So I just wanted to make sure we have all that information in a single place. First off - cu…

3 30 September 17, 2020
About the Usage & Issues category
2 1557 May 28, 2020
CellProfiler 2.0 FAQ
cellprofiler ,  enhanceedges ,  combine ,  smooth ,  maskobjects ,  unmixcolors
22 19880 October 10, 2019
CellProfiler Analyst 2.0 FAQ
cellprofiler-analyst
5 1673 June 5, 2015
Developer Notes
cellprofiler
9 1574 February 27, 2010
CellProfiler 2.0 FAQ
cellprofiler
1 1082 January 20, 2010
Updating Fiji to use SNT Plugin
fiji ,  imagej ,  neuroanatomy ,  updater ,  snt
3 43 September 22, 2020
Calibration Issues
imagej ,  calibration
6 56 September 22, 2020
Image/File Management
zeiss ,  zen ,  image-search ,  image-repository ,  file-search ,  adobe-bridge ,  explorer
1 15 September 22, 2020
Bfconvert: input files larger than physical RAM
bio-formats ,  bfconvert
1 11 September 22, 2020
No labels in final step
deeplabcut
7 192 September 22, 2020
Export to spreadsheet will not produce output in the test mode
cellprofiler
3 21 September 22, 2020
Run groovy from command line
qupath
5 23 September 22, 2020
Clij2 not using the GPU
clij
14 64 September 22, 2020
Spot Tracking "Bug report" in ICY
icy ,  plugin
4 57 September 22, 2020
Unable to open .lif files in ImageJ
imagej
16 1749 September 22, 2020
Shortcuts across multiple FIJI instances
fiji ,  imagej
2 21 September 22, 2020
Opening ORF files in ImageJ
imagej
1 14 September 22, 2020
CellProfiler 4.0.4 startup error on Windows - unsupported locale setting
cellprofiler
10 80 September 22, 2020
Implement QuPath in NextCloud
plugin ,  qupath
2 26 September 22, 2020
Saved .csv file is 0kb in Qupath v.0.1.3
qupath
2 28 September 22, 2020
Napari issues (it works but no GPU and the GUI is all squashed!)
python ,  napari
22 865 September 22, 2020
Windows installation failed due to error in installing build dependencies
napari
3 43 September 22, 2020
How to debug the OMERO mail system
omero ,  omero-server ,  email
5 80 September 22, 2020
Using Ellipsoid Factor in a Macro
bonej ,  macro
3 93 September 22, 2020
CellProfiler 3.1.8 won't open on MacOS
cellprofiler
9 607 September 21, 2020
Icy Protocol Version Control
icy
1 22 September 21, 2020
Omero.web Django version
python
2 24 September 21, 2020
"Fresh start" macro command in ImageJ / Fiji
fiji ,  imagej ,  macro
3 50 September 21, 2020
In CellProfiler 4 intensity measurements are not available for export in ExportToSpreadsheet
cellprofiler
3 35 September 21, 2020