Usage & Issues


Topic Replies Views Activity
Instructions for creating an Update Site
update-site

We have been getting a few Update Site requests lately and along with them, many questions regarding the steps to create one. So I just wanted to make sure we have all that information in a single place. First off - cu…

2 126 September 17, 2020
About the Usage & Issues category
1 1742 November 5, 2020
CellProfiler 2.0 FAQ
cellprofiler ,  enhanceedges ,  combine ,  smooth ,  maskobjects ,  unmixcolors
21 21265 October 10, 2019
CellProfiler Analyst 2.0 FAQ
cellprofiler-analyst
4 1758 June 5, 2015
Developer Notes
cellprofiler
8 1654 February 27, 2010
CellProfiler 2.0 FAQ
cellprofiler
0 1137 January 20, 2010
[Big Warp] Issue with disruption in exported image on Big Warp
imagej ,  bigwarp
6 82 March 8, 2021
Changing position of Guide Pattern
micro-manager
1 12 March 8, 2021
Saving stack to a macro-created folder, issue with ImageJ 1.53h
fiji ,  imagej ,  macro
0 15 March 8, 2021
Programmatically set display "zoom-level" in ImageJ/Fiji
fiji ,  imagej ,  display
8 45 March 8, 2021
.nd2-TIFF and OMERO Conversion Errors
bio-formats ,  omero
4 89 March 8, 2021
Installer Error
mib
3 150 March 8, 2021
Path to Images In OMERO
omero ,  python
4 182 March 8, 2021
Error trying to convert / read MetaSystems ".vsi" image
fiji ,  bio-formats ,  industry ,  bfconvert ,  bftools
5 132 March 8, 2021
2.0 Gamma Mac nightly build
micro-manager
5 66 March 8, 2021
Isolated error observed with cell detection, using StarDist
qupath ,  stardist
5 75 March 8, 2021
Omero.matlab disconnecting upon synchronising events on server
omero
14 208 March 8, 2021
Delta frames in h264/5 compression
deeplabcut
4 66 March 8, 2021
Converting ROIs from ImageJ to Qupath
imagej ,  qupath
2 31 March 8, 2021
Ashlar: how to pass multiple images to be stitched?
python ,  ashlar
0 22 March 8, 2021
Clij2 fft filter?
fiji ,  fft ,  clij
21 461 March 8, 2021
Error opening the 3D Viewer with java 8 in Ubuntu 20.04
fiji ,  3d-viewer
1 179 March 8, 2021
Expand or Collapse blocks inside protocols
icy
1 49 March 8, 2021
Perform connected components along specific dimensions
imglib2 ,  imagej-ops
5 307 February 2, 2021
Always open TIFF with Virtual Stack
fiji ,  scifio ,  imagej
7 1388 March 8, 2021
Interactive image alignment
qupath
103 5107 March 6, 2021
I added new bodyparts and trained again, but there's a bug "a mismatch between the current graph and the graph from the checkpoint."
deeplabcut
2 74 March 7, 2021
Extract n number of channels with bfconvert
ome ,  bfconvert
2 59 March 7, 2021
Elephant Error java.net.ConnectException: Connection refused
mastodon ,  elephant
3 78 March 6, 2021
Color support for FLIR/PtGrey Cameras?
micro-manager
9 330 March 6, 2021