Usage & Issues


Topic Replies Views Activity
Developer Notes
cellprofiler
9 1723 March 22, 2021
Instructions for creating an Update Site
update-site

We have been getting a few Update Site requests lately and along with them, many questions regarding the steps to create one. So I just wanted to make sure we have all that information in a single place. First off - cu…

2 153 September 17, 2020
About the Usage & Issues category
1 1804 November 5, 2020
CellProfiler 2.0 FAQ
cellprofiler ,  enhanceedges ,  combine ,  smooth ,  maskobjects ,  unmixcolors
21 21767 October 10, 2019
CellProfiler Analyst 2.0 FAQ
cellprofiler-analyst
4 1783 June 5, 2015
CellProfiler 2.0 FAQ
cellprofiler
0 1159 January 20, 2010
Object Detection with Coordinate of the object in real time
python ,  deeplabcut
0 8 May 11, 2021
TrakEM2 loads full stack for each slice
trakem2
1 22 May 11, 2021
Save image sequence keep using the name of volume as a prefix
imagej1 ,  fiji ,  imagej ,  saveimages ,  image-sequence
2 65 May 11, 2021
CPU and RAM core limit for ilastik
ilastik
6 68 May 11, 2021
TrakEM2 intensity files (trakem2.it) leading to modal error windows
fiji ,  trakem2
17 319 May 11, 2021
Elephant/Mastodon keyboard issue
mastodon ,  elephant
3 40 May 11, 2021
Batch Processing in CellProfiler v4.1.3
cellprofiler
3 41 May 10, 2021
Control the time interval in a grid between different positions
micro-manager
14 149 May 10, 2021
3d viewer issues on Windows
3d-viewer ,  imagej ,  trakem2
0 20 May 10, 2021
Multi animal identity switch
deeplabcut
9 438 May 10, 2021
Problem using the pipeline 3 provided by Beth
cellprofiler
64 338 May 10, 2021
Morph Module Error: Error while processing Morph: 'NoneType' object has no attribute 'dtype'
cellprofiler
3 74 May 10, 2021
Set a fixed Area in Imagej
imagej
1 31 May 10, 2021
Fiji updater and CSBDeep dependency
fiji ,  csbdeep ,  imagej-updater
1 60 May 10, 2021
ROIManager ImageJ does not update time point
imagej
8 127 May 10, 2021
Saving compressed tiff from Fiji/ImageJ
fiji ,  bio-formats ,  scifio ,  imagej
4 88 May 10, 2021
Deconvolving with ImageJ Ops 0.45.7
fiji ,  imagej ,  imagej-ops ,  deconvolution
16 194 May 10, 2021
Pyramid Creation: Unconverted Bioformats vs Ome-Tiff (was: Bioformats2Raw seems very slow on our data)
bio-formats ,  omero
7 117 May 10, 2021
Exclude edges in object classification workflow
ilastik
7 80 May 10, 2021
Meaning of: IndexError: list index out of range
ilastik
2 45 May 10, 2021
Path to Images In OMERO
omero ,  python
9 302 May 10, 2021
[coloc 2] batch analysis don't show and/or programmatically close Colocalization windows
fiji ,  coloc2
0 14 May 10, 2021
Unable to run Cytomine Algorithms
cytomine
3 52 May 10, 2021
CPA 3.0.1 crashes on MacOS 11.2.3
cellprofiler-analyst
6 88 May 10, 2021