Usage & Issues


Topic Replies Views Activity
Instructions for creating an Update Site
update-site

We have been getting a few Update Site requests lately and along with them, many questions regarding the steps to create one. So I just wanted to make sure we have all that information in a single place. First off - cu…

3 32 September 17, 2020
About the Usage & Issues category
2 1558 May 28, 2020
CellProfiler 2.0 FAQ
cellprofiler ,  enhanceedges ,  combine ,  smooth ,  maskobjects ,  unmixcolors
22 19892 October 10, 2019
CellProfiler Analyst 2.0 FAQ
cellprofiler-analyst
5 1673 June 5, 2015
Developer Notes
cellprofiler
9 1574 February 27, 2010
CellProfiler 2.0 FAQ
cellprofiler
1 1082 January 20, 2010
Bfconvert: input files larger than physical RAM
bio-formats ,  bfconvert
6 52 September 24, 2020
Test error worse after extracting outlier frames & refining labels
deeplabcut
9 81 September 24, 2020
Bio-Formats importer
fiji ,  bio-formats
2 28 September 24, 2020
Extract image center position from .CZI metadata in Fiji
fiji ,  metadata ,  czi ,  zen
10 100 September 24, 2020
Image/File Management
zeiss ,  zen ,  image-search ,  image-repository ,  file-search ,  adobe-bridge ,  explorer
2 33 September 24, 2020
Skeleton Builder not finding fully labeled animal
deeplabcut
7 79 September 24, 2020
How to debug the OMERO mail system
omero ,  omero-server ,  email
7 105 September 24, 2020
TMA registration workflow using QuPath
qupath
5 115 September 24, 2020
BigDataProcessor
imagej ,  bigdataprocessor ,  bigdataprocessor2
28 542 September 24, 2020
Running DLC on CPU
deeplabcut
4 47 September 24, 2020
IJ Language: replace backslashes
fiji ,  macro ,  java
5 40 September 24, 2020
Issue with Omero insight admin start
omero-server ,  omero-insight
14 187 September 24, 2020
Trainable Weka Segmentation Broken by shutdown
fiji ,  plugin
13 119 September 24, 2020
Importing IJ into IJ1 macro
fiji
2 30 September 24, 2020
Launching MMStudio in MATLAB
micro-manager
1 20 September 23, 2020
BAR Find Peaks: how can I speed it up?
fiji ,  imagej ,  bar ,  find-peaks
11 178 September 23, 2020
"Fresh start" macro command in ImageJ / Fiji
fiji ,  imagej ,  macro
4 134 September 23, 2020
Find maximal rectangle inscribed in a selection
fiji ,  macro
1 27 September 23, 2020
Updating Fiji to use SNT Plugin
fiji ,  imagej ,  neuroanatomy ,  updater ,  snt
5 72 September 23, 2020
Zeiss Dual Filter Wheel in micro-manager
micro-manager
1 18 September 23, 2020
Use NI PXI 6723 DAQ in Micromanager
micro-manager
3 26 September 23, 2020
What is the best way to montage and annotate images using ImageJ?
montage
2 22 September 23, 2020
MorphographX for Windows 10
morphographx
1 15 September 23, 2020
Spot Tracking "Bug report" in ICY
icy ,  plugin
6 69 September 23, 2020