Usage & Issues


Topic Replies Views Activity
Developer Notes
cellprofiler
9 1732 March 22, 2021
Instructions for creating an Update Site
update-site

We have been getting a few Update Site requests lately and along with them, many questions regarding the steps to create one. So I just wanted to make sure we have all that information in a single place. First off - cu…

2 165 September 17, 2020
About the Usage & Issues category
1 1819 November 5, 2020
Metadata "lost" when uploaded to OMERO and opened back in Fiji
fiji ,  omero
3 50 June 14, 2021
QuPath on Mac - Poor performance, slow, crashes loads
qupath
12 194 June 14, 2021
BigDataProcessor
imagej ,  bigdataprocessor ,  bigdataprocessor2
60 1181 June 14, 2021
Problem exporting xml tracks Trackmate
imagej ,  trackmate
0 8 June 14, 2021
Micro manager not showing histograms
imagej ,  micro-manager
4 73 June 14, 2021
Unidentified identifier error
fiji ,  imagej ,  macro ,  scripting
2 26 June 14, 2021
Update in OMERO Split View option?
omero
0 14 June 14, 2021
Keypoints_only cannot draw skeleton in create_labeled_video
deeplabcut
4 66 June 14, 2021
GPU for DeepLabcut
deeplabcut
9 39 June 14, 2021
SNT hide trace projection
fiji ,  imagej ,  neuroanatomy ,  snt
4 65 June 14, 2021
Problem with ClearVolume and 3D Viewer related to gluegen-rt.dll
fiji ,  clearvolume ,  java3d ,  java
0 16 June 14, 2021
How to terminate a worker in thread_worker in napari?
napari
7 81 June 14, 2021
Calling ParticleAnalyzer API in headless mode (with the same image and parameters) returns different results than "Analyze Particles..."
maven ,  analyze-particles ,  imagej ,  plugin ,  java
5 107 June 13, 2021
Triggerscope DA backwards compatibility
micro-manager
0 21 June 13, 2021
CellProfiler Pipeline compatibility issues
cellprofiler
7 168 June 13, 2021
Move a multiple selection
selection
5 87 June 13, 2021
Toolbar blocked by text area
imagej
5 206 June 13, 2021
Support for .mrxs files + best walkarounds?
qupath
6 136 June 13, 2021
"Format error" when uploading Hamamatsu ndpi WSIs > 6 GB
cytomine
0 28 June 13, 2021
Saving images in micromanager using scripts
micro-manager
0 28 June 13, 2021
Upload error after installing Cytomine
cytomine
5 111 June 13, 2021
Recommended strategy for large volume image data storage - multiple disks
cytomine
3 67 June 13, 2021
Kappa not fitting the same curve it does at a different position
kappa
0 23 June 13, 2021
Show specific plugin on MM2g startup
micro-manager
0 33 June 12, 2021
Inconsistent Analyze Skeleton(2D/3D) Results
imagej ,  plugin ,  skeletonize ,  macro ,  skeleton-analysis ,  analyzeskeleton
0 33 June 12, 2021
Configuring Flir-Oryx camera in MicroManager
imagej
2 48 June 12, 2021
Methodology question: What is the difference in principle or parameters between different DIA software in tissue segment and cell segment?
fiji ,  bio-formats ,  imagej ,  fcsexpress ,  qupath ,  inform ,  halo ,  visiopharm ,  strataquest
11 134 June 12, 2021