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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 4694 February 10, 2020
Welcome to the Image.sc Forum!
Announcements

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 6447 April 29, 2020
Error when adding new bodyparts and retraining network
Usage & Issues
deeplabcut
14 164 October 26, 2020
Can you manually refine labels in test videos?
Usage & Issues
deeplabcut
0 2 October 26, 2020
CLIJ2 Bottom-hat (Sphere) Bug
Usage & Issues
clij
8 46 October 26, 2020
Upcoming calls on next-gen bioimaging data tools (Starting Oct. 29)
Announcements
ome ,  community ,  meeting ,  ome-ngff
32 759 October 26, 2020
DeconvolutionLAB2 macro in a for loop starts all iterations at once and runs out of memory
Usage & Issues
macro ,  deconvolution ,  deconvolutionlab2
1 33 October 26, 2020
Fiji minimal distro
Development
fiji ,  imagej ,  distribution
8 131 October 26, 2020
CLIJ Expert System - call for contributions
Announcements
clij
7 175 October 26, 2020
MM-compatible, cooled camera for long exposure
Usage & Issues
micro-manager
6 111 October 26, 2020
Specify global position of a Tiff
Usage & Issues
bio-formats
1 15 October 26, 2020
Open Xradia (Zeiss microCT) XRM files in Fiji
Announcements
fiji ,  imagej
4 62 October 26, 2020
ImJoy webapp unet segmentation plugin - tensorflow module not found error
Usage & Issues
imjoy
0 3 October 26, 2020
Core mtj file error when training classifier for 3D weka segmentation
Image Analysis
fiji ,  imagej
1 281 October 26, 2020
MaskImage to IdentifyPrimaryObjects
Image Analysis
cellprofiler
3 36 October 26, 2020
Prediction mask to Annotation
Usage & Issues
qupath
4 18 October 26, 2020
Qualitative annotation plugins for Fiji
Announcements
fiji ,  image-annotation ,  ground-truth
0 195 October 8, 2020
Fast Time Series Acquisition for 10GigE Camera?
Usage & Issues
micro-manager
9 125 October 26, 2020
Running MorpholibJ plugin on .ROIs
Image Analysis
fiji ,  roi-manager ,  imagej ,  roi ,  morpholibj
1 16 October 26, 2020
Metadata for OME Next Generation File Format (NGFF)
Announcements
metadata ,  community ,  meeting ,  omero-metadata ,  ome-ngff
13 197 October 26, 2020
Run ActiveContours from within other plugin pipeline?
Development
icy
1 42 October 26, 2020
Test Python plugins on OMERO
Development
omero ,  python
32 444 October 26, 2020
DLC does not generalize to low res videos after using imgaug scaling
Usage & Issues
deeplabcut
4 70 October 26, 2020
Error: File saving error (IOException)
Usage & Issues
fiji ,  imagej ,  macro
1 45 October 26, 2020
Creating codebook starfish
Usage & Issues
starfish
2 18 October 26, 2020
How to load AVI file
Usage & Issues
fiji
6 66 October 26, 2020
Real time processing
Usage & Issues
micro-manager
4 89 October 26, 2020
Roi Annotation to Openslide Coordinates
Usage & Issues
qupath
2 16 October 26, 2020
Pixel classification in ilastik
Image Analysis
segmentation ,  ilastik ,  ilastikpixelclassifi
40 697 October 26, 2020
Registration of 3D ultrasound image
Image Analysis
registration ,  timelapse ,  ultrasound
0 13 October 26, 2020