Image.sc Forum

Topic	Replies	Views	Activity
Related Communities Websites There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory …	2	27837	February 10, 2020
Welcome to the Image.sc Forum! Announcements Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…	4	17102	April 29, 2020
Use brainmapper command line validate retraining network analysis Usage & Issues cellfinder	0	1	July 24, 2024
Errors loading czi stitched images in QuPath 0.5.1 Usage & Issues bio-formats , czi , qupath	5	17	July 24, 2024
Issues with Nutil analysis in QUINT workflow Usage & Issues ilastik , quint , nutil	1	4	July 24, 2024
Colour images in ModularImageAnalysis Image Analysis modular-image-analysis	1	7	July 24, 2024
3D distance measurement - mean minimal distance between surfaces Image Analysis 3d-distance	3	26	July 24, 2024
Lazy conversion into OME-Zarr while changing bit depth Development ome-ngff	12	61	July 24, 2024
Trouble setting up VM instances for connecting to ELEPHANT server Usage & Issues elephant	10	42	July 24, 2024
Read and Write Excel not exporting decimal values of data Usage & Issues fiji , imagej , macro , exporttospreadsheet	4	10	July 24, 2024
IHC & IF results not consistency with each other Image Analysis imagej , qupath	0	7	July 24, 2024
Calculating IHC signal intensity in human microglial cells Image Analysis qupath	2	24	July 24, 2024
Looking for a way to perform MSD analysis within FiJi or Python using Trackmate XML Image Analysis fiji , trackmate , mosaic , msdanalyzer , particle-tracking	2	685	July 23, 2024
Different results from running a model in Cellpose GUI, command line and Arivis Usage & Issues cellpose , cellpose2	5	28	July 23, 2024
Omero web testing using localhost and self-certificates Usage & Issues omero	5	40	July 23, 2024
Exporting a DICOM Stack Usage & Issues fiji , export , imagej , dicom , image-sequence	7	42	July 23, 2024
Upcoming Image Analysis Events Announcements courses , conference , workshop , meeting , symposium	95	4111	July 23, 2024
Participate in user research on bioimage annotation ML development Announcements tracking , segmentation , image-annotation , manual-tracking , manual-annotation , manual-segmentation , labeling , annotation	0	10	July 23, 2024
Separate Show/Hide control of Detections and Annotations in QuPath? Image Analysis qupath	5	2074	July 23, 2024
JACoP BIOP Version, Pearson's Coefficient: Image Analysis fiji , ptbiop	5	1514	July 23, 2024
Is there a way to make a 3D reconstruction from a brightfield 100x z-stack? Image Analysis fiji , imagej , plugin , imaris	1	10	July 23, 2024
How can I setup micromanager software with two cameras of diffrent sizes to run at the same time? Usage & Issues micro-manager , camera	0	5	July 23, 2024
Error importing Trackmate - ilastik xml results into Matlab Usage & Issues trackmate , ilastik	9	265	July 23, 2024
Error while analyzing videos (ValueError Must have the same number of GT and predicted individuals) Usage & Issues deeplabcut	3	30	July 23, 2024
App not running right on Microsoft Development cellprofiler	3	12	July 23, 2024
Merging ROIs together when they are in close proximity Image Analysis fiji , analyze-particles , imagej , macro , roi	3	11	July 23, 2024
Best practice for choosing a threshold for multiple sample fluorescence intensity comparison Image Analysis imagej , qupath	0	14	July 23, 2024
How to fill ROIs with the same color as the stroke one before creating a mask Image Analysis roi	2	12	July 23, 2024
OMERO download permissions? Data Management omero	0	6	July 23, 2024
Finding % area of a thresholded image Image Analysis imagej , macro	8	79	July 23, 2024