Topic Replies Views Activity
Survey for image analysis needs - we need community input!
Announcements
cellprofiler ,  imagej ,  coba

Hi all, You may have recently seen the Center for Open Bioimage Analysis ( COBA ) name and logo around various parts of the forum; we are a new center from Kevin @eliceiri and @AnneCarpenter 's labs whose mission is to …

2 969 May 13, 2020
Related Communities
Websites

There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

3 2333 February 10, 2020
Welcome to the Image.sc Forum!
Announcements

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

5 5486 April 29, 2020
ND2 video frame time stamp corruption in ImageJ metadata
Usage & Issues
fiji ,  bio-formats ,  imagej ,  metadata ,  nikon ,  nd2
14 158 June 2, 2020
MoNuSeg 2018 masks
Image Analysis
fiji
1 4 June 2, 2020
Using stardist with custom model on Fiji
Usage & Issues
stardist
12 111 June 2, 2020
Question about three parameters to estimate PSF with 'Diffraction PSF 3D' plugin
Image Analysis
imagej ,  plugin ,  deconvolution ,  psf
8 2389 June 2, 2020
Problem with the display of the OMERO.web front-end interface
Usage & Issues
omero
6 40 June 2, 2020
Error appeared when running clij benchmark macro, however macro run without a hinch
Usage & Issues
clij
4 48 June 2, 2020
Views.interpolate(....) not working - ImgLib2
Development
imagej
1 12 June 2, 2020
UI Issues on High DPI Displays
Usage & Issues
fiji ,  imagej ,  plugin
1 14 June 2, 2020
[NEUBIAS Academy@Home] Webinar "GPU-accelerated image processing with CLIJ2" + Questions & Answers
Announcements
imagej ,  macro ,  neubias ,  clij
20 384 June 2, 2020
Masson's Trichrome and cell counting
Image Analysis
qupath
5 27 June 2, 2020
Image alignment: use affine matrix from QuPath in other software
Image Analysis
qupath
9 96 June 2, 2020
QuPath v0.2.0 now available!
Announcements
qupath
10 127 June 2, 2020
Identifying germinated vs. non-germinated pollen
Image Analysis
fiji ,  cellprofiler ,  imagej ,  plugin ,  cellprofiler-analyst
2 26 June 2, 2020
Interactive image alignment
Usage & Issues
qupath
102 3166 June 2, 2020
Images registration/alignement, export aligned images
Usage & Issues
qupath
2 68 June 2, 2020
Counting the nuclei labelled by DAPI
Image Analysis
cellprofiler
3 49 June 2, 2020
QuPath 0.2.0 debug logs [resolved]
Usage & Issues
qupath
8 66 June 2, 2020
Does anyone has a protocol for the quantification of Sirius red-stained tissues with ImageJ or also any other tool?
Image Analysis
imagej1 ,  fiji ,  cellprofiler ,  imagej ,  qupath
6 76 June 2, 2020
Stitching in Fiji
Image Analysis
fiji
3 41 June 2, 2020
Skeleton branch length producing zero values for most of the soil pores in Bonej2
Image Analysis
bonej ,  imagej
2 28 June 2, 2020
Thorlabs CS2100M-USB Camera in micro-manger gamma
Usage & Issues
micro-manager
4 63 June 2, 2020
Ridge Detection Feedback
Development
development ,  imagej ,  imagej-ops
23 2933 June 1, 2020
New ZEISS Microscopy Developer Community forum is now online
Announcements
forum ,  python ,  zeiss
4 123 June 1, 2020
ContourPlotter Flashes Briefly, but vanishes
Usage & Issues
contours ,  astroimagej
3 22 June 1, 2020
OMERO.py django-redis 4.10 requieres django>1.11
Usage & Issues
omero
4 126 June 1, 2020
Installing native ubuntu library "libjpeg.so.8” on REDHAT 7
Usage & Issues
deeplabcut
4 273 June 1, 2020
Area selection to a best fit line then get line plot profiles tangent to the best fit line (or curve rather))
Image Analysis
imagej ,  measurements ,  area
4 55 June 1, 2020