Welcome to the Image.sc Forum! [Announcements] (2)

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

How can I calculate BV/TV ratio of cranium? [Image Analysis] (7)
Create Training Data from Binary Mask [Image Analysis] (2)
How to better reduce staining background when count cells [Image Analysis] (6)
Combining different videos with different frame rates in a single movie [Usage & Issues] (5)
New to ImageJ, can I use it as a library(API) without GUI? [Usage & Issues] (3)
Code examples using scijava's IOService [Development] (8)
Nightly build not being built nightly? [Usage & Issues] (8)
Is there a command line? [Usage & Issues] (2)
Set Bioformats metadata on existing TIFF [Development] (7)
Analyze Particles in Image Stack [Image Analysis] (4)
Superimpose atlas image onto microscope picture [Image Analysis] (19)
[Ilastik] Exporting traces as 2D contours [Image Analysis] (4)
Thresholding bug Image5D [Image Analysis] (3)
Output differences in Results table between PC and Mac [Image Analysis] (5)
Image visualisation in Jupyter using ij.py [Usage & Issues] (1)
Failed to execute script CellProfiler [Usage & Issues] (1)
Grid/Collection Stitching Error [Usage & Issues] (2)
Manual Tracking results format change [Usage & Issues] (1)
Ilastik won't start on Win8.1Pro since 1.3.0 [Usage & Issues] (8)
Using ZipInputStream with Javascript [Development] (1)
Would it be better to list plugins by feature ontology? [Development] (4)
Metadata in RDF [Development] (2)
Automatic Non-rigid Histological Image Registration (ANHIR) challenge [Announcements] (1)
Statistics over set of images [Usage & Issues] (3)
Bio-Formats 6 update [Announcements] (11)
Having the Scale Bar on a separate layer than the background (original image)? [Image Analysis] (2)
Seeded region growing imglib2 [Development] (5)
Saving as KLB support in ImageJ/SciFio [Usage & Issues] (2)
Working with Principal Axes from Object Classification for creating of bounding ellipses [Image Analysis] (19)