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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 7188 February 10, 2020
Welcome to the Image.sc Forum!
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Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 7685 April 29, 2020
Applying pixel classification Thresholder on detected cells
Image Analysis
qupath ,  multiplex ,  pixel-classifier
4 38 February 27, 2021
Segmenting overlapping/ touching nuclei with scikit_image
Image Analysis
segmentation
0 13 February 27, 2021
How did I create this z-stack matrix image?
Image Analysis
fiji ,  imagej
1 29 February 27, 2021
Simple Neurite Tracer SWC loading problems
Usage & Issues
fiji ,  imagej ,  neuroanatomy ,  snt
9 226 February 27, 2021
doCommand() with user defined functions
Image Analysis
fiji ,  batch-processing ,  macro
3 136 February 27, 2021
Fiji/ImageJ convert NaN to 0 parseFloat bug with arrays and tables
Usage & Issues
fiji ,  imagej ,  macro ,  bug ,  results-table
2 43 February 27, 2021
Tracing individual neurites
Image Analysis
cellprofiler
1 37 February 27, 2021
Texture Analysis
Image Analysis
cellprofiler ,  texture
1 20 February 27, 2021
Delete mode in EditObjectsManually module
Usage & Issues
cellprofiler
1 15 February 27, 2021
Limit to Threshold setting isn't giving me area of thresholded pixels on FIJI
Usage & Issues
fiji
8 325 February 27, 2021
Issue with starting Fiji wothout JRE on Ubuntu
Usage & Issues
java
0 20 February 27, 2021
Too many DLL loaded from .libs
Development
deeplabcut
0 16 February 27, 2021
Error building QuPath with tensorflow "first number in a CFBundleVersion cannot be zero or negative"
Usage & Issues
qupath ,  tensorflow
4 54 February 27, 2021
Intersection of longest principal axis and object surface
Usage & Issues
bonej
5 74 February 22, 2021
Installing and applying shortcut to macro
Usage & Issues
fiji ,  imagej ,  macro
4 60 February 27, 2021
How can I set each skeleton line into different colors?
Usage & Issues
deeplabcut
0 21 February 27, 2021
MultiAnimal Cross Validation KeyError
Usage & Issues
deeplabcut
1 48 February 27, 2021
Saving labeled images AttributeError PandasArray
Image Analysis
deeplabcut
1 24 February 27, 2021
Issue with reading slice coordinate of Rois in RoiManager when using Hyperstacks
Usage & Issues
fiji ,  imagej
7 88 February 27, 2021
Omero.matlab disconnecting upon synchronising events on server
Usage & Issues
omero
8 129 February 27, 2021
Supress MorpholibJs log window output
Development
morpholibj
10 64 February 27, 2021
Problem deleting selected labels
Usage & Issues
deeplabcut
1 38 February 27, 2021
How to run Register Virtual Stack Slices as a macro without user interaction?
Usage & Issues
jython ,  imagej ,  plugin ,  matlab ,  macro ,  macrorecorder
41 2633 February 27, 2021
Importing Leica .SCN WSIs above 2 Gigapixel limit
Usage & Issues
fiji ,  bio-formats ,  imagej ,  java
0 22 February 27, 2021
The tracking effect of multiple animals under iron net is poor(DLC2.2b)
Image Analysis
imagej ,  deeplabcut
6 77 February 27, 2021
Is it possible to open the Napari viewer with the layer controls and layer list GUI elements hidden?
Usage & Issues
napari
1 68 February 27, 2021
Open a .jar plugin in Fiji
Usage & Issues
fiji ,  trakem2
1 27 February 26, 2021
Updating plugin ResultsToExcel automatically is not working
Usage & Issues
fiji ,  imagej ,  plugin ,  macro
7 72 February 26, 2021