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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 8568 February 10, 2020
Welcome to the Image.sc Forum!
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Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 8279 April 29, 2020
Using the full pickle file
Usage & Issues
deeplabcut
7 378 May 9, 2021
Exclude edges in object classification workflow
Usage & Issues
ilastik
6 61 May 9, 2021
Control the time interval in a grid between different positions
Usage & Issues
micro-manager
9 96 May 9, 2021
Analyze particles: outline of nested particles
Image Analysis
fiji ,  analyze-particles ,  imagej
5 88 May 9, 2021
OpenCl and Icy: Maven prototype wrong?
Development
maven ,  icy ,  opencl
0 13 May 9, 2021
Extracting Pores from Image with Noise and different Brightness
Image Analysis
fiji ,  imagej
6 161 May 9, 2021
Deconvolving with ImageJ Ops 0.45.7
Usage & Issues
fiji ,  imagej ,  imagej-ops ,  deconvolution
11 150 May 9, 2021
SNT - Problem with script for reconstruction from segmented images
Usage & Issues
snt
2 43 May 9, 2021
ImgLib2 HessianMatrix memory usage
Image Analysis
development ,  imglib2 ,  java ,  scripting
0 25 May 9, 2021
Fluorescence intensity/Integrated density calculation - "Analyze particles" or simply "Measure"
Image Analysis
fiji ,  analyze-particles ,  imagej
0 31 May 8, 2021
Fill incomplete holes (beginner help) / Histological analysis
Image Analysis
histology ,  fiji ,  imagej ,  macro
13 2422 May 8, 2021
Deproj export formats in 3D
Usage & Issues
plugin ,  matlab ,  deproj
5 53 May 8, 2021
Morph Module Error: Error while processing Morph: 'NoneType' object has no attribute 'dtype'
Usage & Issues
cellprofiler
2 54 May 8, 2021
First and second order flattening
Image Analysis
imagej ,  correctillumination ,  background ,  homogenize
1 56 May 8, 2021
Elastix Wrapper Build Fails
Development
intellij ,  elastix
9 114 May 8, 2021
Error Java 3d not installed
Usage & Issues
3d ,  java3d ,  imagej ,  java ,  3d-filter
1 36 May 8, 2021
Point selection with shapes layer + Shapely
Image Analysis
napari
4 399 May 8, 2021
Pair distribution function
Image Analysis
fiji ,  imagej
0 36 May 8, 2021
Napari taking very long time to load
Usage & Issues
napari ,  cellfinder
1 48 May 8, 2021
Error message when loading .avi files
Image Analysis
fiji ,  imagej ,  java
3 66 May 8, 2021
ImageJ 1.53i macro error
Usage & Issues
imagej
1 51 May 8, 2021
Development of Python-based 2D section -> 3D atlas registration tool
Development
registration ,  python ,  napari ,  neuroscience
32 2035 May 7, 2021
Saving an ND image with pyimagej
Image Analysis
bio-formats ,  imagej ,  pyimagej
0 36 May 7, 2021
A Rare Error Writing Tile - No compatible writer found
Image Analysis
qupath
5 50 May 7, 2021
How to exclude certain objects in image from ROI measurements?
Image Analysis
fiji ,  imagej ,  segmentation ,  roi ,  thresholding
1 46 May 7, 2021
Problem using the pipeline 3 provided by Beth
Usage & Issues
cellprofiler
46 257 May 7, 2021
Path to Images In OMERO
Usage & Issues
omero ,  python
8 283 May 7, 2021
How to change the LUTs in a brightfield image?
Usage & Issues
qupath
7 106 May 7, 2021