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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 6553 February 10, 2020
Welcome to the Image.sc Forum!
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Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 7411 April 29, 2020
HamamatsuHam in Python - MMCore
Development
micro-manager
2 36 January 26, 2021
Distance between polygons
Image Analysis
fiji ,  imagej
5 956 January 26, 2021
Multi animal identity switch
Usage & Issues
deeplabcut
7 171 January 26, 2021
Segmentation of ambiguous grey area (melt pool) - similar looking areas
Image Analysis
fiji ,  imagej ,  segmentation ,  trainable-weka
10 24 January 26, 2021
Polygon and other ROI annotations in ome-zarr?
Development
ome ,  napari ,  ome-ngff ,  zarr ,  ome-zarr
2 68 January 26, 2021
Help with Groovy script for Trackmate using track filters
Image Analysis
imagej ,  trackmate ,  scripting
4 91 January 26, 2021
Segmentation of the egg components in brightfield image in Fiji
Image Analysis
fiji ,  segmentation
4 25 January 26, 2021
Expandable array
Usage & Issues
fiji
2 66 January 26, 2021
About processing of images captured via cell painting
Image Analysis
cellprofiler
5 61 January 26, 2021
Split .tiff into 4 channels
Image Analysis
fiji
1 20 January 26, 2021
RE: Can't import entire pyramidal WSI file in OMERO
Usage & Issues
omero ,  wsi
10 120 January 26, 2021
Weka macro for multiclass classifier
Image Analysis
weka ,  macro ,  segmentation
0 17 January 26, 2021
Error NamesAndTypes Java Attribute Error 'mssage'
Usage & Issues
cellprofiler
3 65 January 26, 2021
Which ImageJ-related tasks would help you the most?
Development
fiji ,  scijava ,  imagej
0 45 January 26, 2021
Installing JACoP
Usage & Issues
fiji
13 647 January 26, 2021
Problem related to .tif and .scn while extracting images from them using python-bioformats
Image Analysis
bio-formats ,  cellprofiler ,  python-bioformats
15 310 January 26, 2021
Printing to tools menu messages from device adapter?
Development
micro-manager
1 24 January 26, 2021
Assign point objects to different ROIs by overlap
Usage & Issues
qupath
7 700 January 26, 2021
ImageJ Inconsistency
Usage & Issues
imagej ,  macro ,  imagej-macro
4 74 January 26, 2021
Counting within a ROI
Usage & Issues
qupath
4 70 January 26, 2021
Save custom metadata with a sequence
Usage & Issues
icy
0 15 January 26, 2021
How to avoid image data mishandling and misconducts? A commentary
Usage & Issues
neubias ,  reproducibility
21 518 January 26, 2021
Protocols, retrieve currently displayed frame (timepoints) from a time sequence
Usage & Issues
icy
0 12 January 26, 2021
"Ghost" files taking storage space in OMERO
Usage & Issues
omero ,  omero-web
1 24 January 26, 2021
Error when passing a variable (3D viewer macro)
Image Analysis
macro
1 18 January 26, 2021
Convert DLC pose_net inference to Pytorch
Development
deeplabcut
2 26 January 26, 2021
Analysis of dlc output
Development
deeplabcut
2 35 January 26, 2021
FYI, DeepLabCut worked on Radeon GPU & RTX3080 (Using tensorflow-directml)
Usage & Issues
deeplabcut
1 84 January 26, 2021