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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

3 3421 February 10, 2020
Welcome to the Image.sc Forum!
Announcements

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

5 5927 April 29, 2020
Strange behavior of "open" in a macro
Usage & Issues
macro ,  pyimagej
1 9 August 12, 2020
Missing features
Usage & Issues
napari
3 21 August 12, 2020
Slow ImageJ Processing
Image Analysis
fiji ,  imagej ,  scripting
3 68 August 12, 2020
Set measurements of results table
Usage & Issues
imagej ,  results-table
2 32 August 12, 2020
Research Fellow / Research Software Engineer position to help develop QuPath
Job Opportunities
development ,  imagej ,  java ,  job ,  qupath ,  javafx ,  ux
1 275 July 21, 2020
StarDist: structure of Data-Science-Bowl-data does not match the one required for Training a StarDist model
Image Analysis
stardist
6 76 August 12, 2020
Network does not generalize
Image Analysis
deeplabcut
2 17 August 12, 2020
Error message in cell detection analysis ("found two shells in MinimalEdgeRing list")
Image Analysis
qupath
2 17 August 12, 2020
.qpdata file in a project
Image Analysis
qupath
3 23 August 12, 2020
Error message when processing Neuroanatomy
Image Analysis
fiji
3 12 August 12, 2020
HCS site generator plugin doesn't build xy list
Usage & Issues
micro-manager
3 40 August 12, 2020
Plugins for imaging mass cytometry
Image Analysis
icy
11 219 August 12, 2020
Math Analysis assistance requested for determining the amount of expression on image
Image Analysis
knime ,  imagej ,  stain-vectors
14 387 August 12, 2020
Open VSI images in QuPath
Usage & Issues
bio-formats ,  qupath
9 48 August 12, 2020
Vessel Analysis
Image Analysis
fiji ,  imagej ,  vessel-analysis
4 714 August 12, 2020
Problem importing 1sc files with overlays?
Usage & Issues
bio-formats ,  imagej ,  plugin
10 112 August 12, 2020
Some imported images are distorted in OMERO
Usage & Issues
omero
6 89 August 12, 2020
Specific Slices from Stack
Development
imagej ,  macro
2 40 August 12, 2020
Straighten along a segmented line in 3D
Image Analysis
imagej
14 91 August 12, 2020
"Fit Sphere" throws error despite 5 points being on different slices
Usage & Issues
fiji ,  bonej ,  imagej ,  roi
3 28 August 12, 2020
"Ask An Expert" Session by FUJIFILM
Announcements
fiji ,  cellprofiler ,  imagej ,  ilastik ,  qupath
4 230 August 12, 2020
Sheep skin biopsy analysis
Image Analysis
cellprofiler
2 21 August 12, 2020
Export 3D time lapse images as 3d movie
Image Analysis
icy
1 15 August 12, 2020
Endocytic organelles
Image Analysis
cellprofiler
15 3428 August 12, 2020
The issue of batch processing
Usage & Issues
imagej
3 52 August 12, 2020
Compression artifacts in OMERO.iviewer
Usage & Issues
omero ,  omero-iviewer
3 61 August 12, 2020
ZeroCostDL4Mic: an open platform to use Deep-Learning in Microscopy
Announcements
deep-learning ,  care ,  unet ,  noise2void ,  stardist ,  zerocostdl4mic ,  cyclegan ,  pix2pix ,  yolo ,  deepstorm ,  fnet
1 98 August 12, 2020
Feature Extraction (Extract SIFT/MOPS Correspondences) via command line
Usage & Issues
mpicbg ,  plugin
1 18 August 12, 2020