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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 8570 February 10, 2020
Welcome to the Image.sc Forum!
Announcements

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 8280 April 29, 2020
Segmented image exploration
Announcements
3 206 May 9, 2021
Problem using the pipeline 3 provided by Beth
Usage & Issues
cellprofiler
48 265 May 9, 2021
SNT - Problem with script for reconstruction from segmented images
Usage & Issues
snt
3 55 May 9, 2021
Using the full pickle file
Usage & Issues
deeplabcut
8 387 May 9, 2021
Importin .czi TMA Map into QuPath
Image Analysis
qupath
8 218 May 9, 2021
Help with processing chains for TANGO plugin
Image Analysis
fiji ,  imagej ,  plugin ,  segmentation
6 827 May 9, 2021
Generic Macro + 2 outputs
Usage & Issues
imagej ,  batch-processing ,  macro
30 343 May 9, 2021
Deconvolving with ImageJ Ops 0.45.7
Usage & Issues
fiji ,  imagej ,  imagej-ops ,  deconvolution
12 160 May 9, 2021
Control the time interval in a grid between different positions
Usage & Issues
micro-manager
10 107 May 9, 2021
File Directory - Error
Image Analysis
fiji ,  batch-processing ,  macro
1 16 May 9, 2021
Measuring area of a specific color range/filling incomplete objects?
Image Analysis
fiji
1 13 May 9, 2021
Analyze particles: outline of nested particles
Image Analysis
fiji ,  analyze-particles ,  imagej
6 98 May 9, 2021
Exclude edges in object classification workflow
Usage & Issues
ilastik
6 69 May 9, 2021
OpenCl and Icy: Maven prototype wrong?
Development
maven ,  icy ,  opencl
0 17 May 9, 2021
Extracting Pores from Image with Noise and different Brightness
Image Analysis
fiji ,  imagej
6 167 May 9, 2021
ImgLib2 HessianMatrix memory usage
Image Analysis
development ,  imglib2 ,  java ,  scripting
0 30 May 9, 2021
Fluorescence intensity/Integrated density calculation - "Analyze particles" or simply "Measure"
Image Analysis
fiji ,  analyze-particles ,  imagej
0 34 May 8, 2021
Fill incomplete holes (beginner help) / Histological analysis
Image Analysis
histology ,  fiji ,  imagej ,  macro
13 2443 May 8, 2021
Deproj export formats in 3D
Usage & Issues
plugin ,  matlab ,  deproj
5 55 May 8, 2021
Morph Module Error: Error while processing Morph: 'NoneType' object has no attribute 'dtype'
Usage & Issues
cellprofiler
2 55 May 8, 2021
First and second order flattening
Image Analysis
imagej ,  correctillumination ,  background ,  homogenize
1 56 May 8, 2021
Elastix Wrapper Build Fails
Development
intellij ,  elastix
9 114 May 8, 2021
Error Java 3d not installed
Usage & Issues
3d ,  java3d ,  imagej ,  java ,  3d-filter
1 38 May 8, 2021
Point selection with shapes layer + Shapely
Image Analysis
napari
4 401 May 8, 2021
Pair distribution function
Image Analysis
fiji ,  imagej
0 36 May 8, 2021
Napari taking very long time to load
Usage & Issues
napari ,  cellfinder
1 49 May 8, 2021
Error message when loading .avi files
Image Analysis
fiji ,  imagej ,  java
3 66 May 8, 2021
ImageJ 1.53i macro error
Usage & Issues
imagej
1 52 May 8, 2021