Topic Replies Views Activity
Related Communities
Websites

There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 9291 February 10, 2020
Welcome to the Image.sc Forum!
Announcements

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 8644 April 29, 2020
CLIJ2 macro error when processing 5 GB z-stack
Usage & Issues
fiji ,  macro ,  clij
2 18 June 18, 2021
SNT - Sholl analysis - how to store data from multiple sholl analyses in the same image?
Usage & Issues
neuroanatomy ,  plugin ,  sholl-analysis ,  snt
34 505 June 18, 2021
Sholl: Merging profiles with different radii
Usage & Issues
neuroanatomy ,  sholl ,  snt
1 10 June 18, 2021
3D rotate and reslice
Image Analysis
fiji
2 62 June 18, 2021
Trainable Weka Segmention - how to apply classifier to another image
Image Analysis
fiji ,  imagej
4 147 June 18, 2021
How to measure Total tube length in a field of view using angiogenesis analyzer
Image Analysis
imagej ,  plugin
0 17 June 18, 2021
3D sheet-like structure quantification in ImageJ
Image Analysis
imagescience ,  imagej
2 37 June 18, 2021
Problems with script using floodFill
Development
macro ,  scripting
1 27 June 18, 2021
Java library for computing x-ray and gamma-ray photon absorption
Announcements
imagej ,  plugin ,  java
3 105 June 18, 2021
Can't Open XML file with MaMut
Usage & Issues
fiji ,  ilastik
5 37 June 18, 2021
Bit Stitcher crash after load xml
Usage & Issues
bigstitcher
2 24 June 18, 2021
Running macro in headless mode
Usage & Issues
fiji
1 40 June 18, 2021
Correlation between F-Actin and collagen bundle
Image Analysis
fiji ,  cellprofiler ,  imagej
2 32 June 18, 2021
Disconnect between point layer data and display
Usage & Issues
napari
2 30 June 18, 2021
Light-sheet microscopy file processing
Image Analysis
fiji ,  stitching ,  imagej ,  bigstitcher ,  openspim ,  zen ,  lightsheet
20 800 June 18, 2021
Omero python API. How to get metadata for Image ID?
Data Management
omero ,  java ,  python
6 266 June 18, 2021
Could not load project file in ilastik
Usage & Issues
ilastik
0 18 June 18, 2021
CLIJ deconvolution
Image Analysis
fiji ,  imagej ,  plugin ,  clij
107 3519 June 18, 2021
3D label image - how to edit shape and keep label information
Image Analysis
fiji ,  3d ,  morpholibj ,  label-image
1 20 June 18, 2021
Please help me use setROI()/MMROIManager
Usage & Issues
micro-manager
0 18 June 18, 2021
Training taking several days CPU
Usage & Issues
deeplabcut
5 123 June 18, 2021
Problem in DLC installation
Usage & Issues
deeplabcut
12 117 June 18, 2021
Pre-setting server address for OMERO.insight in the Windows registry
Data Management
omero ,  omero-insight
3 64 June 18, 2021
BigDataProcessor
Usage & Issues
imagej ,  bigdataprocessor ,  bigdataprocessor2
71 1299 June 18, 2021
Fitting circles to semi-transparent spheres
Image Analysis
object-recognition
0 25 June 18, 2021
Size of neuron in pixels
Image Analysis
imagej
2 59 June 18, 2021
Segmentation pipeline from ilastik to napari
Image Analysis
ilastik ,  napari
10 193 June 18, 2021
Analyzeskeleton Branch length specifics
Image Analysis
imagej ,  analyzeskeleton
4 47 June 18, 2021