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There are several other community forums whose topics overlap with this one: Microforum’s focus is hardware, acquisition, and specimen-related aspects of scientific imaging, particularly (but not limited to) theory a…

2 8069 February 10, 2020
Welcome to the Image.sc Forum!
Announcements

Welcome to the Scientific Community Image Forum at forum.image.sc! This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag…

4 8068 April 29, 2020
Ellipsoid factor
Image Analysis
bonej
5 97 April 13, 2021
OutOfMemory exceptions importing ome.tiff files over 9 or 10GB
Usage & Issues
ome-tiff ,  bftools ,  omero-server ,  omero-insight
8 155 April 13, 2021
Bad Allocation in Pixel Classifier
Usage & Issues
qupath
9 245 April 13, 2021
LoopBuilder to combine channels
Development
imglib2
0 16 April 13, 2021
Ellipsoid factor on open sub-volume
Image Analysis
bonej
8 127 April 13, 2021
Status of PYME with Big Sur (and M1)
Development
pyme
1 40 April 13, 2021
Abberior files slow to open
Usage & Issues
bio-formats
2 66 April 13, 2021
QuickFigures: A PlugIn for building scientific figures, (Update)
Announcements
fiji ,  imagej ,  plugin ,  java
2 49 April 12, 2021
Randomise points within a polygon ROI
Image Analysis
imagej
3 747 April 12, 2021
CPA Edit Rules for Validation
Image Analysis
cellprofiler-analyst
0 19 April 12, 2021
Updating version of Renjin supported in SciJava
Development
r ,  scijava ,  java ,  renjin
5 129 April 12, 2021
New image format plugin drag'n'drop integration
Development
imagej ,  plugin ,  java ,  scripting
1 38 April 12, 2021
Interfacing with NI DAQ device after each multi dimensional acquisition
Usage & Issues
micro-manager
5 131 April 12, 2021
How to align the image in order to overlap the two images
Image Analysis
imagej
18 15052 April 12, 2021
Quantification of a signal and excluding areas?
Image Analysis
fiji
7 95 April 12, 2021
Fiji User Macro Error
Usage & Issues
fiji
0 28 April 12, 2021
Avast put QuPath "in the chest" because it detected IDP.generic
Usage & Issues
qupath
3 237 April 12, 2021
Unable to save trained model
Usage & Issues
fiji ,  n2v
2 34 April 12, 2021
Unmix Colors - Labeling switched in custom stains?
Usage & Issues
cellprofiler
6 66 April 12, 2021
Finetuning automatic image alignment in QuPath
Image Analysis
batch-processing ,  scripting ,  qupath
1 51 April 12, 2021
ExportToDatabase SQLite Output to subfolders based on Metadata tags
Usage & Issues
cellprofiler
2 31 April 12, 2021
Amira Avizo Segmentation Network Problem
Image Analysis
segmentation ,  avizo ,  amira
1 37 April 12, 2021
Plugin similar to Imaris "Channel Arithmetics"?
Image Analysis
fiji ,  imagej ,  plugin ,  macro ,  qupath
3 92 April 12, 2021
QuPath Scripting (Classifiers across projects)
Image Analysis
qupath
15 195 April 12, 2021
Registration of whole slide images at cellular resolution with Fiji and QuPath
Announcements
fiji ,  imglib2 ,  registration ,  qupath ,  wsi ,  bigwarp ,  elastix
1 198 April 12, 2021
User testing: get a sneak peek at the new napari hub and provide feedback on finding and evaluating plugins!
Community Partners
napari
0 29 April 12, 2021
QuPath not loading pyramid TIFFs properly
Usage & Issues
bio-formats ,  qupath
6 96 April 12, 2021
Finding Radius of Curvature with Fiji
Image Analysis
fiji ,  imagej
7 120 April 12, 2021